RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 KCNJ11Q14654 390 aa15.36■□□□□ 0.05
CLN3-229ENST00000567963 NR6A1Q15406 480 aa15.36■□□□□ 0.05
CLN3-229ENST00000567963 TRIP13Q15645 432 aaPredicted RBP15.36■□□□□ 0.05
CLN3-229ENST00000567963 ANKRD20A4Q4UJ75 823 aa15.36■□□□□ 0.05
CLN3-229ENST00000567963 ARMC3Q5W041 872 aa15.36■□□□□ 0.05
CLN3-229ENST00000567963 KIAA0930Q6ICG6 404 aaPredicted RBP15.36■□□□□ 0.05
CLN3-229ENST00000567963 RNF44Q7L0R7 432 aa15.36■□□□□ 0.05
CLN3-229ENST00000567963 CUZD1Q86UP6 607 aa15.36■□□□□ 0.05
CLN3-229ENST00000567963 PRELID2Q8N945 189 aa15.36■□□□□ 0.05
CLN3-229ENST00000567963 OR9A1PQ8NGU1 263 aa15.36■□□□□ 0.05
CLN3-229ENST00000567963 BARD1Q99728 777 aaKnown RBP15.36■□□□□ 0.05
CLN3-229ENST00000567963 ZNF304Q9HCX3 659 aa15.36■□□□□ 0.05
CLN3-229ENST00000567963 TSR3Q9UJK0 312 aaKnown RBP15.36■□□□□ 0.05
CLN3-229ENST00000567963 COPG1Q9Y678 874 aaKnown RBP15.36■□□□□ 0.05
CLN3-229ENST00000567963 FAM169AQ9Y6X4 670 aa15.36■□□□□ 0.05
CLN3-229ENST00000567963 SPTBN1Q01082 2364 aaKnown RBP15.36■□□□□ 0.05
CLN3-229ENST00000567963 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.35■□□□□ 0.05
CLN3-229ENST00000567963 OR2A25A4D2G3 310 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 EIF2S1P05198 315 aaKnown RBP15.35■□□□□ 0.05
CLN3-229ENST00000567963 ERGP11308 486 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 CMPK1P30085 196 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 MAGEA6P43360 314 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 GLRBP48167 497 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 NAA25Q14CX7 972 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 KLHL38Q2WGJ6 581 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 ACSBG2Q5FVE4 666 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 EEF1AKMT2Q5JPI9 291 aaKnown RBP15.35■□□□□ 0.05
CLN3-229ENST00000567963 AGAP7PQ5VUJ5 663 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 HIST2H2BCQ6DN03 193 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 PRMT9Q6P2P2 845 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 IGFL2Q6UWQ7 119 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 CENPUQ71F23 418 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 CILP2Q8IUL8 1156 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 PARP9Q8IXQ6 854 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 AGAP4Q96P64 663 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 ZFYVE21Q9BQ24 234 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 DPH7Q9BTV6 452 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 ACAT2Q9BWD1 397 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 PCDHGA10Q9Y5H3 936 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 CSAG2Q9Y5P2 127 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 MDC1Q14676 2089 aaKnown RBP15.35■□□□□ 0.05
CLN3-229ENST00000567963 HIVEP3Q5T1R4 2406 aa15.35■□□□□ 0.05
CLN3-229ENST00000567963 ARHGEF33A8MVX0 844 aa15.34■□□□□ 0.05
CLN3-229ENST00000567963 PSIP1O75475 530 aaKnown RBP15.34■□□□□ 0.05
CLN3-229ENST00000567963 DDAH2O95865 285 aa15.34■□□□□ 0.05
CLN3-229ENST00000567963 ZGLP1P0C6A0 271 aa15.34■□□□□ 0.05
CLN3-229ENST00000567963 PKMP14618 531 aaKnown RBP15.34■□□□□ 0.05
CLN3-229ENST00000567963 PAMP19021 973 aa15.34■□□□□ 0.05
CLN3-229ENST00000567963 OCA2Q04671 838 aa15.34■□□□□ 0.05
CLN3-229ENST00000567963 KLC1Q07866 573 aa15.34■□□□□ 0.05
CLN3-229ENST00000567963 GPS1Q13098 491 aa15.34■□□□□ 0.05
CLN3-229ENST00000567963 RBBP7Q16576 425 aa15.34■□□□□ 0.05
CLN3-229ENST00000567963 HIF1AQ16665 826 aa15.34■□□□□ 0.05
CLN3-229ENST00000567963 TUBB8Q3ZCM7 444 aa15.34■□□□□ 0.05
CLN3-229ENST00000567963 NEPROQ6NW34 567 aa15.34■□□□□ 0.05
CLN3-229ENST00000567963 SUSD1Q6UWL2 747 aa15.34■□□□□ 0.05
CLN3-229ENST00000567963 CAND1Q86VP6 1230 aaKnown RBP15.34■□□□□ 0.05
CLN3-229ENST00000567963 OR11G2Q8NGC1 345 aa15.34■□□□□ 0.05
CLN3-229ENST00000567963 STT3BQ8TCJ2 826 aa15.34■□□□□ 0.05
CLN3-229ENST00000567963 PPP4R1Q8TF05 950 aa15.34■□□□□ 0.05
CLN3-229ENST00000567963 SMPDL3AQ92484 453 aa15.34■□□□□ 0.05
CLN3-229ENST00000567963 VPS50Q96JG6 964 aa15.34■□□□□ 0.05
CLN3-229ENST00000567963 WDR77Q9BQA1 342 aaPredicted RBP15.34■□□□□ 0.05
CLN3-229ENST00000567963 LHPPQ9H008 270 aa15.34■□□□□ 0.05
CLN3-229ENST00000567963 MRPS30Q9NP92 439 aaKnown RBP15.34■□□□□ 0.05
CLN3-229ENST00000567963 STOX2Q9P2F5 926 aaPredicted RBP15.34■□□□□ 0.05
CLN3-229ENST00000567963 ZNF282Q9UDV7 671 aaPredicted RBP15.34■□□□□ 0.05
CLN3-229ENST00000567963 VPS9D1Q9Y2B5 631 aa15.34■□□□□ 0.05
CLN3-229ENST00000567963 MAGEB16A2A368 324 aa15.33■□□□□ 0.05
CLN3-229ENST00000567963 WIPF3A6NGB9 483 aa15.33■□□□□ 0.05
CLN3-229ENST00000567963 E5RI56 91 aa15.33■□□□□ 0.05
CLN3-229ENST00000567963 MYO1CO00159 1063 aa15.33■□□□□ 0.05
CLN3-229ENST00000567963 CARSP49589 748 aaKnown RBP15.33■□□□□ 0.05
CLN3-229ENST00000567963 VPS41P49754 854 aa15.33■□□□□ 0.05
CLN3-229ENST00000567963 CLCN7P51798 805 aa15.33■□□□□ 0.05
CLN3-229ENST00000567963 ARHGAP19Q14CB8 494 aa15.33■□□□□ 0.05
CLN3-229ENST00000567963 MUM1Q2TAK8 710 aa15.33■□□□□ 0.05
CLN3-229ENST00000567963 PRTGQ2VWP7 1150 aa15.33■□□□□ 0.05
CLN3-229ENST00000567963 IRAK1BP1Q5VVH5 260 aa15.33■□□□□ 0.05
CLN3-229ENST00000567963 ANKRD22Q5VYY1 191 aa15.33■□□□□ 0.05
CLN3-229ENST00000567963 CASC4Q6P4E1 433 aa15.33■□□□□ 0.05
CLN3-229ENST00000567963 LRRC8AQ8IWT6 810 aa15.33■□□□□ 0.05
CLN3-229ENST00000567963 MIEF2Q96C03 454 aa15.33■□□□□ 0.05
CLN3-229ENST00000567963 C10orf90Q96M02 699 aa15.33■□□□□ 0.05
CLN3-229ENST00000567963 PLCD4Q9BRC7 762 aa15.33■□□□□ 0.05
CLN3-229ENST00000567963 TRIM56Q9BRZ2 755 aaKnown RBP15.33■□□□□ 0.05
CLN3-229ENST00000567963 CRB3Q9BUF7 120 aa15.33■□□□□ 0.05
CLN3-229ENST00000567963 INTS10Q9NVR2 710 aaKnown RBP15.33■□□□□ 0.05
CLN3-229ENST00000567963 ERRFI1Q9UJM3 462 aaPredicted RBP15.33■□□□□ 0.05
CLN3-229ENST00000567963 NTNG1Q9Y2I2 539 aa15.33■□□□□ 0.05
CLN3-229ENST00000567963 HEATR5BQ9P2D3 2071 aa15.33■□□□□ 0.04
CLN3-229ENST00000567963 IGLV3-12A0A075B6K2 115 aa15.33■□□□□ 0.04
CLN3-229ENST00000567963 IGKV1-8A0A0C4DH67 115 aa15.33■□□□□ 0.04
CLN3-229ENST00000567963 FAM237BA0A1B0GVD1 139 aa15.33■□□□□ 0.04
CLN3-229ENST00000567963 ANKUB1A6NFN9 424 aa15.33■□□□□ 0.04
CLN3-229ENST00000567963 H0YGG7 62 aa15.33■□□□□ 0.04
CLN3-229ENST00000567963 KRT14P02533 472 aa15.33■□□□□ 0.04
CLN3-229ENST00000567963 ERVK-10P10266 1014 aa15.33■□□□□ 0.04
CLN3-229ENST00000567963 RPA3P35244 121 aaPredicted RBP15.33■□□□□ 0.04
CLN3-229ENST00000567963 EMP3P54852 163 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms