RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ERGP11308 486 aa19.84■□□□□ 0.77
CLN3-219ENST00000565778 MLLT10P55197 1068 aa19.84■□□□□ 0.77
CLN3-219ENST00000565778 FOXK1P85037 733 aa19.84■□□□□ 0.77
CLN3-219ENST00000565778 CRYMQ14894 314 aa19.84■□□□□ 0.77
CLN3-219ENST00000565778 SPANXN3Q5MJ09 141 aa19.84■□□□□ 0.77
CLN3-219ENST00000565778 PAPD7Q5XG87 772 aaKnown RBP19.84■□□□□ 0.77
CLN3-219ENST00000565778 UGT3A1Q6NUS8 523 aa19.84■□□□□ 0.77
CLN3-219ENST00000565778 MRGPREQ86SM8 312 aa19.84■□□□□ 0.77
CLN3-219ENST00000565778 CPNE9Q8IYJ1 553 aa19.84■□□□□ 0.77
CLN3-219ENST00000565778 OR4N4Q8N0Y3 316 aa19.84■□□□□ 0.77
CLN3-219ENST00000565778 PPFIBP2Q8ND30 876 aa19.84■□□□□ 0.77
CLN3-219ENST00000565778 ZDHHC19Q8WVZ1 309 aaPredicted RBP19.84■□□□□ 0.77
CLN3-219ENST00000565778 NAT9Q9BTE0 207 aa19.84■□□□□ 0.77
CLN3-219ENST00000565778 PCDHGB7Q9Y5F8 929 aa19.84■□□□□ 0.77
CLN3-219ENST00000565778 SAR1BQ9Y6B6 198 aa19.84■□□□□ 0.77
CLN3-219ENST00000565778 TTLL8A6PVC2 850 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 GFYI3L273 518 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 NRP2O60462 931 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 SLC16A8O95907 504 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 ALBP02768 609 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 IVDP26440 423 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 PAFAH1B1P43034 410 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 OR1D4P47884 311 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 CARSP49589 748 aaKnown RBP19.83■□□□□ 0.77
CLN3-219ENST00000565778 DR1Q01658 176 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 PRDX1Q06830 199 aaKnown RBP19.83■□□□□ 0.77
CLN3-219ENST00000565778 RAPSNQ13702 412 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 MSS51Q4VC12 460 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 HP1BP3Q5SSJ5 553 aaPredicted RBP19.83■□□□□ 0.77
CLN3-219ENST00000565778 SYDE1Q6ZW31 735 aaPredicted RBP19.83■□□□□ 0.77
CLN3-219ENST00000565778 UBE2R2Q712K3 238 aaPredicted RBP19.83■□□□□ 0.77
CLN3-219ENST00000565778 CREG2Q8IUH2 290 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 METTL27Q8N6F8 245 aaPredicted RBP19.83■□□□□ 0.77
CLN3-219ENST00000565778 CLEC1AQ8NC01 280 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 FBXO15Q8NCQ5 510 aaPredicted RBP19.83■□□□□ 0.77
CLN3-219ENST00000565778 C2CD4AQ8NCU7 369 aaPredicted RBP19.83■□□□□ 0.77
CLN3-219ENST00000565778 CD200R1Q8TD46 325 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 ZNF480Q8WV37 535 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 FKBP10Q96AY3 582 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 RUNDC3BQ96NL0 473 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 NDNQ99608 321 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 NAPGQ99747 312 aaPredicted RBP19.83■□□□□ 0.77
CLN3-219ENST00000565778 ZFYVE21Q9BQ24 234 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 NUDT9Q9BW91 350 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 SLC6A20Q9NP91 592 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 PPANQ9NQ55 473 aaKnown RBP19.83■□□□□ 0.77
CLN3-219ENST00000565778 P4HTMQ9NXG6 502 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 UTP6Q9NYH9 597 aaKnown RBP19.83■□□□□ 0.77
CLN3-219ENST00000565778 GPR83Q9NYM4 423 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 TAC3Q9UHF0 121 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 TRMT6Q9UJA5 497 aaKnown RBP19.83■□□□□ 0.77
CLN3-219ENST00000565778 MAU2Q9Y6X3 613 aa19.83■□□□□ 0.77
CLN3-219ENST00000565778 SNRNP200O75643 2136 aaKnown RBP19.82■□□□□ 0.76
CLN3-219ENST00000565778 OR2A25A4D2G3 310 aa19.82■□□□□ 0.76
CLN3-219ENST00000565778 CCNDBP1O95273 360 aa19.82■□□□□ 0.76
CLN3-219ENST00000565778 ONECUT2O95948 504 aa19.82■□□□□ 0.76
CLN3-219ENST00000565778 UMODP07911 640 aa19.82■□□□□ 0.76
CLN3-219ENST00000565778 ITGAXP20702 1163 aa19.82■□□□□ 0.76
CLN3-219ENST00000565778 SKIV2L2P42285 1042 aaKnown RBP19.82■□□□□ 0.76
CLN3-219ENST00000565778 NADK2Q4G0N4 442 aa19.82■□□□□ 0.76
CLN3-219ENST00000565778 THEMIS2Q5TEJ8 643 aa19.82■□□□□ 0.76
CLN3-219ENST00000565778 RNF44Q7L0R7 432 aa19.82■□□□□ 0.76
CLN3-219ENST00000565778 IGDCC3Q8IVU1 814 aa19.82■□□□□ 0.76
CLN3-219ENST00000565778 TMEM151BQ8IW70 566 aa19.82■□□□□ 0.76
CLN3-219ENST00000565778 PDIK1LQ8N165 341 aa19.82■□□□□ 0.76
CLN3-219ENST00000565778 COL26A1Q96A83 441 aa19.82■□□□□ 0.76
CLN3-219ENST00000565778 PLCD4Q9BRC7 762 aa19.82■□□□□ 0.76
CLN3-219ENST00000565778 ZNF304Q9HCX3 659 aa19.82■□□□□ 0.76
CLN3-219ENST00000565778 ENAMQ9NRM1 1142 aa19.82■□□□□ 0.76
CLN3-219ENST00000565778 TAS2R13Q9NYV9 303 aa19.82■□□□□ 0.76
CLN3-219ENST00000565778 STOX2Q9P2F5 926 aaPredicted RBP19.82■□□□□ 0.76
CLN3-219ENST00000565778 ANKMY1Q9P2S6 941 aa19.82■□□□□ 0.76
CLN3-219ENST00000565778 PLAAQ9Y263 795 aa19.82■□□□□ 0.76
CLN3-219ENST00000565778 E7ENX8 843 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 H0YGG7 62 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 SMAPO00193 183 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 DPM1O60762 260 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 AHSGP02765 367 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 RGS4P49798 205 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 ARF3P61204 181 aaPredicted RBP19.81■□□□□ 0.76
CLN3-219ENST00000565778 TAP2Q03519 686 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 MORF4L2Q15014 288 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 NKG7Q16617 165 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 DCAF10Q5QP82 559 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 ICE2Q659A1 982 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 SHISA6Q6ZSJ9 500 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 PIWIL4Q7Z3Z4 852 aaKnown RBP19.81■□□□□ 0.76
CLN3-219ENST00000565778 PPP1R32Q7Z5V6 425 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 PALM2Q8IXS6 379 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 MCOLN3Q8TDD5 553 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 EEF1AKMT1Q8WVE0 214 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 PWWP2AQ96N64 755 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 WDR54Q9H977 334 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 ATP13A2Q9NQ11 1180 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 CDC23Q9UJX2 597 aa19.81■□□□□ 0.76
CLN3-219ENST00000565778 EIF3FO00303 357 aaPredicted RBP19.8■□□□□ 0.76
CLN3-219ENST00000565778 ELK3P41970 407 aa19.8■□□□□ 0.76
CLN3-219ENST00000565778 ABATP80404 500 aa19.8■□□□□ 0.76
CLN3-219ENST00000565778 MUM1Q2TAK8 710 aa19.8■□□□□ 0.76
CLN3-219ENST00000565778 LRRC8EQ6NSJ5 796 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms