RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 NAA25Q14CX7 972 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 TPSAB1Q15661 275 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 RBBP7Q16576 425 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 HIF1AQ16665 826 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 TUBB8Q3ZCM7 444 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 ARMC3Q5W041 872 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 FBXO42Q6P3S6 717 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 CNSTQ6PJW8 725 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 ZNF662Q6ZS27 426 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 SHISA6Q6ZSJ9 500 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 METTL27Q8N6F8 245 aaPredicted RBP16.35■□□□□ 0.21
CLN3-216ENST00000565316 MAIP1Q8WWC4 291 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 VPS50Q96JG6 964 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 LHPPQ9H008 270 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 ZNF304Q9HCX3 659 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 SOX13Q9UN79 622 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 NOVA2Q9UNW9 492 aaKnown RBP16.35■□□□□ 0.21
CLN3-216ENST00000565316 SLC5A6Q9Y289 635 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 CSAG2Q9Y5P2 127 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 LRBAP50851 2863 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 DOCK10Q96BY6 2186 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 IGLV3-12A0A075B6K2 115 aa16.34■□□□□ 0.21
CLN3-216ENST00000565316 A0A0J9YVX5 310 aa16.34■□□□□ 0.21
CLN3-216ENST00000565316 A1L4Q6 167 aa16.34■□□□□ 0.21
CLN3-216ENST00000565316 NIPSNAP2O75323 286 aa16.34■□□□□ 0.21
CLN3-216ENST00000565316 FGGP02679 453 aa16.34■□□□□ 0.21
CLN3-216ENST00000565316 MAGEA6P43360 314 aa16.34■□□□□ 0.21
CLN3-216ENST00000565316 TSFMP43897 325 aaKnown RBP16.34■□□□□ 0.21
CLN3-216ENST00000565316 KCNJ1P48048 391 aa16.34■□□□□ 0.21
CLN3-216ENST00000565316 GLRBP48167 497 aa16.34■□□□□ 0.21
CLN3-216ENST00000565316 CARSP49589 748 aaKnown RBP16.34■□□□□ 0.21
CLN3-216ENST00000565316 YBX1P67809 324 aaKnown RBP16.34■□□□□ 0.21
CLN3-216ENST00000565316 FASTKQ14296 549 aaKnown RBP16.34■□□□□ 0.21
CLN3-216ENST00000565316 PRTGQ2VWP7 1150 aa16.34■□□□□ 0.21
CLN3-216ENST00000565316 KIAA0930Q6ICG6 404 aaPredicted RBP16.34■□□□□ 0.21
CLN3-216ENST00000565316 CES3Q6UWW8 571 aa16.34■□□□□ 0.21
CLN3-216ENST00000565316 GSTA5Q7RTV2 222 aa16.34■□□□□ 0.21
CLN3-216ENST00000565316 ST6GALNAC3Q8NDV1 305 aa16.34■□□□□ 0.21
CLN3-216ENST00000565316 OR9A1PQ8NGU1 263 aa16.34■□□□□ 0.21
CLN3-216ENST00000565316 ZC3H7BQ9UGR2 993 aaKnown RBP16.34■□□□□ 0.21
CLN3-216ENST00000565316 MAU2Q9Y6X3 613 aa16.34■□□□□ 0.21
CLN3-216ENST00000565316 TCRBV7S3A2A0A539 114 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 ARHGEF33A8MVX0 844 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 GOLGA8KD6RF30 607 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 GOLGA8TH3BQL2 631 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 MYO1CO00159 1063 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 PFDN6O15212 129 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 PHF2O75151 1096 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 PSIP1O75475 530 aaKnown RBP16.33■□□□□ 0.2
CLN3-216ENST00000565316 CLDN1O95832 211 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 ZGLP1P0C6A0 271 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 OGNP20774 298 aaKnown RBP16.33■□□□□ 0.2
CLN3-216ENST00000565316 KLC1Q07866 573 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 ARHGAP19Q14CB8 494 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 ANKRD20A4Q4UJ75 823 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.33■□□□□ 0.2
CLN3-216ENST00000565316 IRAK1BP1Q5VVH5 260 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 ATG9BQ674R7 924 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 B3GNTL1Q67FW5 361 aaPredicted RBP16.33■□□□□ 0.2
CLN3-216ENST00000565316 MAMDC2Q7Z304 686 aaPredicted RBP16.33■□□□□ 0.2
CLN3-216ENST00000565316 PARP9Q8IXQ6 854 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 OTUD6BQ8N6M0 293 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 DNAJB14Q8TBM8 379 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 STT3BQ8TCJ2 826 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 SMPDL3AQ92484 453 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 C10orf90Q96M02 699 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 ZFYVE21Q9BQ24 234 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 DPH7Q9BTV6 452 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 CRB3Q9BUF7 120 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 AGPAT4Q9NRZ5 378 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 GALPQ9UBC7 116 aa16.33■□□□□ 0.2
CLN3-216ENST00000565316 ZNF282Q9UDV7 671 aaPredicted RBP16.33■□□□□ 0.2
CLN3-216ENST00000565316 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.32■□□□□ 0.2
CLN3-216ENST00000565316 IGKV1-8A0A0C4DH67 115 aa16.32■□□□□ 0.2
CLN3-216ENST00000565316 A0A1W2PQ72 361 aa16.32■□□□□ 0.2
CLN3-216ENST00000565316 H0YGG7 62 aa16.32■□□□□ 0.2
CLN3-216ENST00000565316 HPP00738 406 aa16.32■□□□□ 0.2
CLN3-216ENST00000565316 CMPK1P30085 196 aa16.32■□□□□ 0.2
CLN3-216ENST00000565316 ARF3P61204 181 aaPredicted RBP16.32■□□□□ 0.2
CLN3-216ENST00000565316 OCA2Q04671 838 aa16.32■□□□□ 0.2
CLN3-216ENST00000565316 ELOAQ14241 798 aaKnown RBP16.32■□□□□ 0.2
CLN3-216ENST00000565316 KCNJ11Q14654 390 aa16.32■□□□□ 0.2
CLN3-216ENST00000565316 MUM1Q2TAK8 710 aa16.32■□□□□ 0.2
CLN3-216ENST00000565316 ACSBG2Q5FVE4 666 aa16.32■□□□□ 0.2
CLN3-216ENST00000565316 KCNMB4Q86W47 210 aa16.32■□□□□ 0.2
CLN3-216ENST00000565316 MIEF2Q96C03 454 aa16.32■□□□□ 0.2
CLN3-216ENST00000565316 THOC3Q96J01 351 aaKnown RBP16.32■□□□□ 0.2
CLN3-216ENST00000565316 C5orf34Q96MH7 638 aa16.32■□□□□ 0.2
CLN3-216ENST00000565316 LMF1Q96S06 567 aa16.32■□□□□ 0.2
CLN3-216ENST00000565316 PLCD4Q9BRC7 762 aa16.32■□□□□ 0.2
CLN3-216ENST00000565316 MESP1Q9BRJ9 268 aa16.32■□□□□ 0.2
CLN3-216ENST00000565316 SYNPO2LQ9H987 977 aa16.32■□□□□ 0.2
CLN3-216ENST00000565316 HOMER3Q9NSC5 361 aa16.32■□□□□ 0.2
CLN3-216ENST00000565316 C3orf18Q9UK00 162 aa16.32■□□□□ 0.2
CLN3-216ENST00000565316 CRYL1Q9Y2S2 319 aa16.32■□□□□ 0.2
CLN3-216ENST00000565316 GOLGA6L6A8MZA4 724 aa16.31■□□□□ 0.2
CLN3-216ENST00000565316 E2F3O00716 465 aa16.31■□□□□ 0.2
CLN3-216ENST00000565316 EIF2S1P05198 315 aaKnown RBP16.31■□□□□ 0.2
CLN3-216ENST00000565316 PKMP14618 531 aaKnown RBP16.31■□□□□ 0.2
CLN3-216ENST00000565316 ACPPP15309 386 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms