RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 HES6Q96HZ4 224 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 TREX1Q9NSU2 369 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 MARCH4Q9P2E8 410 aaPredicted RBP15.66■□□□□ 0.1
CLN3-208ENST00000561505 CIDEBQ9UHD4 219 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 MRPS2Q9Y399 296 aaKnown RBP15.66■□□□□ 0.1
CLN3-208ENST00000561505 SVILO95425 2214 aa15.66■□□□□ 0.1
CLN3-208ENST00000561505 TRAV17A0A0B4J275 112 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 NRP2O60462 931 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 PHF2O75151 1096 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 BMP10O95393 424 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 ATXN8OSP0DMR3 200 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 CCNFP41002 786 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 OCA2Q04671 838 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 DSG2Q14126 1118 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 NAA25Q14CX7 972 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 MUM1Q2TAK8 710 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 TTC23LQ6PF05 361 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 LINC00696Q6ZRV3 163 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 PEX26Q7Z412 305 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 LRRC6Q86X45 466 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 KRT222Q8N1A0 295 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 UBL4BQ8N7F7 174 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 RNF214Q8ND24 703 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 OR1N1Q8NGS0 311 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 OR6P1Q8NGX9 317 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 CFAP61Q8NHU2 1237 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 CNDP1Q96KN2 507 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 PANX3Q96QZ0 392 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 FRMD8P1Q9BZ68 369 aaPredicted RBP15.65■□□□□ 0.1
CLN3-208ENST00000561505 UNKQ9C0B0 810 aaKnown RBP15.65■□□□□ 0.1
CLN3-208ENST00000561505 ZNF160Q9HCG1 818 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 SPATA7Q9P0W8 599 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 ZC3H7BQ9UGR2 993 aaKnown RBP15.65■□□□□ 0.1
CLN3-208ENST00000561505 C3orf18Q9UK00 162 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 NFS1Q9Y697 457 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 MAU2Q9Y6X3 613 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 FAM169AQ9Y6X4 670 aa15.65■□□□□ 0.1
CLN3-208ENST00000561505 IGHV1-45A0A0A0MS14 117 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 MAP2K7O14733 419 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 CD3EAPO15446 510 aaKnown RBP15.64■□□□□ 0.09
CLN3-208ENST00000561505 LIASO43766 372 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 GAS8O95995 478 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 PSMB5P28074 263 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 ATP5DP30049 168 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 SLC26A3P40879 764 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 YBX1P67809 324 aaKnown RBP15.64■□□□□ 0.09
CLN3-208ENST00000561505 TMED2Q15363 201 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 VWA2Q5GFL6 755 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 PCID2Q5JVF3 399 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 TMEM205Q6UW68 189 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 LDB1Q86U70 411 aaPredicted RBP15.64■□□□□ 0.09
CLN3-208ENST00000561505 TAX1BP1Q86VP1 789 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 SYCE1Q8N0S2 351 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 DNAJB8Q8NHS0 232 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 ITLN2Q8WWU7 325 aaPredicted RBP15.64■□□□□ 0.09
CLN3-208ENST00000561505 C8orf44Q96CB5 159 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 BIRC8Q96P09 236 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 ZFYVE21Q9BQ24 234 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 SYNPO2LQ9H987 977 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 CATSPERZQ9NTU4 200 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 ABI3Q9P2A4 366 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 CDC14AQ9UNH5 594 aa15.64■□□□□ 0.09
CLN3-208ENST00000561505 NSG1A0A0A6YYJ2 146 aa15.63■□□□□ 0.09
CLN3-208ENST00000561505 IGKV1-8A0A0C4DH67 115 aa15.63■□□□□ 0.09
CLN3-208ENST00000561505 IDSB3KWA1 339 aa15.63■□□□□ 0.09
CLN3-208ENST00000561505 ADARP55265 1226 aaKnown RBP15.63■□□□□ 0.09
CLN3-208ENST00000561505 PRAMEP78395 509 aa15.63■□□□□ 0.09
CLN3-208ENST00000561505 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.63■□□□□ 0.09
CLN3-208ENST00000561505 GARNL3Q5VVW2 1013 aa15.63■□□□□ 0.09
CLN3-208ENST00000561505 FJX1Q86VR8 437 aa15.63■□□□□ 0.09
CLN3-208ENST00000561505 TAB3Q8N5C8 712 aaPredicted RBP15.63■□□□□ 0.09
CLN3-208ENST00000561505 METTL27Q8N6F8 245 aaPredicted RBP15.63■□□□□ 0.09
CLN3-208ENST00000561505 AMER3Q8N944 861 aa15.63■□□□□ 0.09
CLN3-208ENST00000561505 BRIX1Q8TDN6 353 aaKnown RBP15.63■□□□□ 0.09
CLN3-208ENST00000561505 ATG4AQ8WYN0 398 aa15.63■□□□□ 0.09
CLN3-208ENST00000561505 IMMP1LQ96LU5 166 aa15.63■□□□□ 0.09
CLN3-208ENST00000561505 MIPEPQ99797 713 aa15.63■□□□□ 0.09
CLN3-208ENST00000561505 TRIM5Q9C035 493 aa15.63■□□□□ 0.09
CLN3-208ENST00000561505 ZNF700Q9H0M5 742 aa15.63■□□□□ 0.09
CLN3-208ENST00000561505 CHRAC1Q9NRG0 131 aa15.63■□□□□ 0.09
CLN3-208ENST00000561505 C14orf105Q9NVL8 296 aa15.63■□□□□ 0.09
CLN3-208ENST00000561505 COPG2Q9UBF2 871 aa15.63■□□□□ 0.09
CLN3-208ENST00000561505 ANAPC5Q9UJX4 755 aa15.63■□□□□ 0.09
CLN3-208ENST00000561505 TTC7AQ9ULT0 858 aaPredicted RBP15.63■□□□□ 0.09
CLN3-208ENST00000561505 PACSIN2Q9UNF0 486 aaPredicted RBP15.63■□□□□ 0.09
CLN3-208ENST00000561505 A0A0J9YVX5 310 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 DYTNA2CJ06 578 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 H0YGG7 62 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 FOXS1O43638 330 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 ARNTP27540 789 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 EFNA3P52797 238 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 EMP2P54851 167 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 NAP1L1P55209 391 aaKnown RBP15.62■□□□□ 0.09
CLN3-208ENST00000561505 ARF3P61204 181 aaPredicted RBP15.62■□□□□ 0.09
CLN3-208ENST00000561505 ARHGAP19Q14CB8 494 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 CTSL3PQ5NE16 218 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 ZNF425Q6IV72 752 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 PPP1R21Q6ZMI0 780 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 PAQR7Q86WK9 346 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 MCEMP1Q8IX19 187 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms