RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 TLR6Q9Y2C9 796 aa12.91□□□□□ -0.34
CSPG4P11-201ENST00000560634 A8MT66 165 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 HAS3O00219 553 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 NPPAP01160 153 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 HK1P19367 917 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 CRY2Q49AN0 593 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 KIAA1161Q6NSJ0 714 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 FAM129CQ86XR2 697 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 CLIP4Q8N3C7 705 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 OR2L8Q8NGY9 312 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 FAM110BQ8TC76 370 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 CDKN2AIPNLQ96HQ2 116 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 SLC38A3Q99624 504 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 MND1Q9BWT6 205 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 TRPV4Q9HBA0 871 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 NUP50Q9UKX7 468 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 CDC14AQ9UNH5 594 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 ASB3Q9Y575 518 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 ITSN1Q15811 1721 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 OR6C70A6NIJ9 312 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 EFNA1P20827 205 aaPredicted RBP12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 S100A2P29034 98 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 GRK5P34947 590 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 GSK3BP49841 420 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 MAPK14Q16539 360 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 MOGQ16653 247 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 TMEM198Q66K66 360 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 SLC35A5Q9BS91 424 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 SIX2Q9NPC8 291 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 WTIPA6NIX2 430 aaPredicted RBP12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 INMTO95050 263 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 ENGP17813 658 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 PVALBP20472 110 aaPredicted RBP12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 ADAM15Q13444 863 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 DEFB115Q30KQ5 88 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 TOR1AIP1Q5JTV8 583 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 RBM23Q86U06 439 aaKnown RBP12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 PAQR7Q86WK9 346 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 ARL14EPQ8N8R7 260 aaPredicted RBP12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 THAP6Q8TBB0 222 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 EPYCQ99645 322 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 SEZ6LQ9BYH1 1024 aa12.9□□□□□ -0.34
CSPG4P11-201ENST00000560634 ARL5CA6NH57 179 aa12.9□□□□□ -0.35
CSPG4P11-201ENST00000560634 SLC38A8A6NNN8 435 aa12.9□□□□□ -0.35
CSPG4P11-201ENST00000560634 WASP42768 502 aa12.9□□□□□ -0.35
CSPG4P11-201ENST00000560634 MAGEA12P43365 314 aa12.9□□□□□ -0.35
CSPG4P11-201ENST00000560634 TAS2R50P59544 299 aa12.9□□□□□ -0.35
CSPG4P11-201ENST00000560634 TREML2Q5T2D2 321 aa12.9□□□□□ -0.35
CSPG4P11-201ENST00000560634 IQCHQ86VS3 1027 aa12.9□□□□□ -0.35
CSPG4P11-201ENST00000560634 ZNF527Q8NB42 609 aa12.9□□□□□ -0.35
CSPG4P11-201ENST00000560634 SGCDQ92629 289 aa12.9□□□□□ -0.35
CSPG4P11-201ENST00000560634 CYP2S1Q96SQ9 504 aa12.9□□□□□ -0.35
CSPG4P11-201ENST00000560634 CYTH4Q9UIA0 394 aa12.9□□□□□ -0.35
CSPG4P11-201ENST00000560634 NEMP2A6NFY4 417 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 ENPP3O14638 875 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 WNT9AO14904 365 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 CCL16O15467 120 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 CBSLP0DN79 551 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 CBSP35520 551 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 ACADVLP49748 655 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 SP140Q13342 867 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 SLBPQ14493 270 aaKnown RBP eCLIP12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 ZNF829Q3KNS6 432 aaPredicted RBP12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 CARD16Q5EG05 197 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 KLHDC10Q6PID8 442 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 ZNF782Q6ZMW2 699 aaPredicted RBP12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 ANKFN1Q8N957 763 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 CMTM7Q96FZ5 175 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 NDC1Q9BTX1 674 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 MRPS17Q9Y2R5 130 aaKnown RBP12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 NEURL4Q96JN8 1562 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 NUAK1O60285 661 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 KDM4BO94953 1096 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 BNIP3Q12983 259 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 KLF1Q13351 362 aaPredicted RBP12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 GANABQ14697 944 aaKnown RBP12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 ASTE1Q2TB18 679 aaPredicted RBP12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 ZNF517Q6ZMY9 492 aaPredicted RBP12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 ERMP1Q7Z2K6 904 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 TMEM126BQ8IUX1 230 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 KCTD13Q8WZ19 329 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 IL4I1Q96RQ9 567 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 UCK2Q9BZX2 261 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 RIPK3Q9Y572 518 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 MST1RQ04912 1400 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 A0A1W2PP18 115 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 TRBC2A0A5B9 178 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 M0QX08 132 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 ECI2O75521 394 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 ITGB1P05556 798 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 CHRNA4P43681 627 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 DUOXA1Q1HG43 343 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 ZNF630Q2M218 657 aaPredicted RBP12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 VITQ6UXI7 678 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 ZNF627Q7L945 461 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 AMIGO1Q86WK6 493 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 AURKBQ96GD4 344 aaPredicted RBP12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 RIPOR3Q96MK2 946 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 B3GNT4Q9C0J1 378 aa12.89□□□□□ -0.35
CSPG4P11-201ENST00000560634 GPR88Q9GZN0 384 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 127.9 ms