RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ZNF382Q96SR6 550 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 FEVQ99581 238 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 ADAM2Q99965 735 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 ABHD16BQ9H3Z7 469 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 ARNT2Q9HBZ2 717 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 GKN1Q9NS71 199 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 LTBP3Q9NS15 1303 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 HPRP00739 348 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 RPLP0P05388 317 aaKnown RBP11.03□□□□□ -0.64
LDLR-208ENST00000558518 CA5AP35218 305 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 TTPAP49638 278 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 ACOX1Q15067 660 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 CCDC58Q4VC31 144 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 GPR142Q7Z601 462 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 HS6ST3Q8IZP7 471 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 OR8J3Q8NGG0 315 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 LKAAEAR1Q8TD35 194 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 DHRS1Q96LJ7 313 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 COPS8Q99627 209 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 C11orf16Q9NQ32 467 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 AGO1Q9UL18 857 aaKnown RBP11.03□□□□□ -0.64
LDLR-208ENST00000558518 SLC6A14Q9UN76 642 aa11.03□□□□□ -0.64
LDLR-208ENST00000558518 FCF1Q9Y324 198 aaKnown RBP11.03□□□□□ -0.64
LDLR-208ENST00000558518 ZFP37Q9Y6Q3 630 aaPredicted RBP11.03□□□□□ -0.64
LDLR-208ENST00000558518 COL1A2P08123 1366 aa11.02□□□□□ -0.64
LDLR-208ENST00000558518 RLFQ13129 1914 aa11.02□□□□□ -0.64
LDLR-208ENST00000558518 SIP14410 1827 aa11.02□□□□□ -0.64
LDLR-208ENST00000558518 MTX2O75431 263 aa11.02□□□□□ -0.64
LDLR-208ENST00000558518 SOX14O95416 240 aa11.02□□□□□ -0.64
LDLR-208ENST00000558518 SLC19A1P41440 591 aa11.02□□□□□ -0.64
LDLR-208ENST00000558518 HNRNPFP52597 415 aaKnown RBP11.02□□□□□ -0.64
LDLR-208ENST00000558518 ZNF135P52742 658 aaPredicted RBP11.02□□□□□ -0.64
LDLR-208ENST00000558518 CRYBB1P53674 252 aaPredicted RBP11.02□□□□□ -0.64
LDLR-208ENST00000558518 SERINC3Q13530 473 aa11.02□□□□□ -0.64
LDLR-208ENST00000558518 SMU1Q2TAY7 513 aa11.02□□□□□ -0.64
LDLR-208ENST00000558518 RFX4Q33E94 735 aa11.02□□□□□ -0.64
LDLR-208ENST00000558518 INO80DQ53TQ3 878 aaPredicted RBP11.02□□□□□ -0.64
LDLR-208ENST00000558518 SYCE2Q6PIF2 218 aa11.02□□□□□ -0.64
LDLR-208ENST00000558518 GPR65Q8IYL9 337 aa11.02□□□□□ -0.64
LDLR-208ENST00000558518 CYP4Z2PQ8N1L4 340 aa11.02□□□□□ -0.64
LDLR-208ENST00000558518 PCNPQ8WW12 178 aaKnown RBP11.02□□□□□ -0.64
LDLR-208ENST00000558518 YIPF6Q96EC8 236 aa11.02□□□□□ -0.64
LDLR-208ENST00000558518 OR5M11Q96RB7 305 aa11.02□□□□□ -0.64
LDLR-208ENST00000558518 PSD2Q9BQI7 771 aa11.02□□□□□ -0.64
LDLR-208ENST00000558518 FAM126AQ9BYI3 521 aaPredicted RBP11.02□□□□□ -0.64
LDLR-208ENST00000558518 RANGRFQ9HD47 186 aaPredicted RBP11.02□□□□□ -0.64
LDLR-208ENST00000558518 TLR8Q9NR97 1041 aaKnown RBP11.02□□□□□ -0.64
LDLR-208ENST00000558518 OLA1Q9NTK5 396 aaKnown RBP11.02□□□□□ -0.64
LDLR-208ENST00000558518 ELOVL2Q9NXB9 296 aa11.02□□□□□ -0.64
LDLR-208ENST00000558518 TOR4AQ9NXH8 423 aa11.02□□□□□ -0.64
LDLR-208ENST00000558518 TAS2R9Q9NYW1 312 aa11.02□□□□□ -0.64
LDLR-208ENST00000558518 CCL15-CCL14A0A0B4J2E2 113 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 SMLR1H3BR10 107 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 TNFRSF21O75509 655 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 PDYNP01213 254 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 ACPPP15309 386 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 OGNP20774 298 aaKnown RBP11.02□□□□□ -0.65
LDLR-208ENST00000558518 SOX3P41225 446 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 RGS4P49798 205 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 CCL15Q16663 113 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 LRRC66Q68CR7 880 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 PAMR1Q6UXH9 720 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 ZNF517Q6ZMY9 492 aaPredicted RBP11.02□□□□□ -0.65
LDLR-208ENST00000558518 TAGAPQ8N103 731 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 SLC34A3Q8N130 599 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 MINDY2Q8NBR6 621 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 OR9Q2Q8NGE9 314 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 ISG20Q96AZ6 181 aaKnown RBP11.02□□□□□ -0.65
LDLR-208ENST00000558518 PHOX2BQ99453 314 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 ACBD6Q9BR61 282 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 RLIMQ9NVW2 624 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 SBF1O95248 1867 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 OR6C70A6NIJ9 312 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 ZSCAN5BA6NJL1 495 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 FAM227AF5H4B4 570 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 EPN2O95208 641 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 PRAMEF1O95521 474 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 SDHBP21912 280 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 PPP3CCP48454 512 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 SLAMF1Q13291 335 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 NFE2L1Q14494 772 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 TAF12Q16514 161 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 BCL2A1Q16548 175 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 UPP1Q16831 310 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 ERAP2Q6P179 960 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 KLHL17Q6TDP4 642 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 SERPINA9Q86WD7 417 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 ENTHD1Q8IYW4 607 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 CARNMT1Q8N4J0 409 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 LMNTD1Q8N9Z9 388 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 OR5AK3PQ8NH89 298 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 TSPEARQ8WU66 669 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 PHF10Q8WUB8 498 aaKnown RBP11.02□□□□□ -0.65
LDLR-208ENST00000558518 NELL1Q92832 810 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 GORASP2Q9H8Y8 452 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 CPNE5Q9HCH3 593 aa11.02□□□□□ -0.65
LDLR-208ENST00000558518 SAMD4AQ9UPU9 718 aaKnown RBP11.02□□□□□ -0.65
LDLR-208ENST00000558518 CCDC88CQ9P219 2028 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 LOC285095A0A1B0GVY8 99 aa11.01□□□□□ -0.65
LDLR-208ENST00000558518 HAS3O00219 553 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms