RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 CCDC63Q8NA47 563 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 BRSK1Q8TDC3 778 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 NAT14Q8WUY8 206 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 VPS35Q96QK1 796 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 TSSK1BQ9BXA7 367 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 C12orf65Q9H3J6 166 aaKnown RBP12.12□□□□□ -0.47
SHMT2-230ENST00000557427 FAM96AQ9H5X1 160 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 SLCO1B3Q9NPD5 702 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 C20orf96Q9NUD7 363 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-230ENST00000557427 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.12□□□□□ -0.47
SHMT2-230ENST00000557427 SCHIP1Q9P0W5 487 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-230ENST00000557427 SLC17A6Q9P2U8 582 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 FKBPLQ9UIM3 349 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 NTNG1Q9Y2I2 539 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 ABCA2Q9BZC7 2435 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 NIPBLQ6KC79 2804 aaeCLIP12.11□□□□□ -0.47
SHMT2-230ENST00000557427 HEATR9A2RTY3 570 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 PDZK1P1A8MUH7 402 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 C21orf140B9A014 251 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 CCL22O00626 93 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 POP7O75817 140 aaKnown RBP12.11□□□□□ -0.47
SHMT2-230ENST00000557427 CRTAMO95727 393 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 BPGMP07738 259 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 CCNYL3P0C7X3 344 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 NEFHP12036 1026 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 F3P13726 295 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 PAMP19021 973 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 GALNTL6Q49A17 601 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 HSP90AA5PQ58FG0 334 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 LDLRAP1Q5SW96 308 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 GPRC6AQ5T6X5 926 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 ATG16L1Q676U5 607 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 KIAA0930Q6ICG6 404 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-230ENST00000557427 SPNS3Q6ZMD2 512 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 DET1Q7L5Y6 550 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 SLC9B2Q86UD5 537 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 RASGRP3Q8IV61 690 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 ZNF547Q8IVP9 402 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 RASGEF1AQ8N9B8 481 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 ARMC2Q8NEN0 867 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 OR13C4Q8NGS5 318 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 C10orf82Q8WW14 230 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 INPP5DQ92835 1189 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 TBC1D10AQ9BXI6 508 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 ASB8Q9H765 288 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 TREX1Q9NSU2 369 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 ABCF3Q9NUQ8 709 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 CPNE7Q9UBL6 633 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 LNPEPQ9UIQ6 1025 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 SLC12A4Q9UP95 1085 aa12.11□□□□□ -0.47
SHMT2-230ENST00000557427 MN1Q10571 1320 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-230ENST00000557427 OR2AG2A6NM03 316 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 OR5K4A6NMS3 321 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 GPR89AB7ZAQ6 455 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 GAPDHSO14556 408 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-230ENST00000557427 DCTN3O75935 186 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 DNAJC8O75937 253 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-230ENST00000557427 PRAMEF1O95521 474 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 VIPP01282 170 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 C9P02748 559 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 GPR89BP0CG08 455 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 FGF5P12034 268 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 SLC2A4P14672 509 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 MSH3P20585 1137 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 BGNP21810 368 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 IDSP22304 550 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 PTPN4P29074 926 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 TYK2P29597 1187 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 ALDH3A1P30838 453 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 AKT1P31749 480 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 SCTRP47872 440 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 SEPHS1P49903 392 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 CTSCP53634 463 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 MSLNQ13421 630 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-230ENST00000557427 ITGA9Q13797 1035 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 IL11RAQ14626 422 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 SPDYAQ5MJ70 313 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 LCA5Q86VQ0 697 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 NUDCD3Q8IVD9 361 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 TRIM48Q8IWZ4 208 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 MMP21Q8N119 569 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 BEND7Q8N7W2 519 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-230ENST00000557427 GABPB2Q8TAK5 448 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-230ENST00000557427 DTX3LQ8TDB6 740 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 ADAMTS17Q8TE56 1095 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 SH3KBP1Q96B97 665 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 C7orf26Q96N11 449 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 SMAD5Q99717 465 aaKnown RBP12.1□□□□□ -0.47
SHMT2-230ENST00000557427 RHOJQ9H4E5 214 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 STN1Q9H668 368 aaKnown RBP12.1□□□□□ -0.47
SHMT2-230ENST00000557427 SARS2Q9NP81 518 aaKnown RBP12.1□□□□□ -0.47
SHMT2-230ENST00000557427 SNX15Q9NRS6 342 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 IARS2Q9NSE4 1012 aaKnown RBP12.1□□□□□ -0.47
SHMT2-230ENST00000557427 IL1RAPL1Q9NZN1 696 aa12.1□□□□□ -0.47
SHMT2-230ENST00000557427 ZNF624Q9P2J8 865 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-230ENST00000557427 KIR2DS5A0A0G2JLQ3 304 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 A0A0G2JNG1 304 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 CCDC78A2IDD5 438 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 A6NL46 340 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 KIR2DS3K7RE56 304 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms