RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 KIAA0513O60268 411 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 NPHS1O60500 1241 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 KLK3P07288 261 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-226ENST00000556825 SBK3P0C264 359 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 APEHP13798 732 aaKnown RBP13.46□□□□□ -0.25
SHMT2-226ENST00000556825 ARSAP15289 507 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 TPSB2P20231 275 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 GPX3P22352 226 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 GBX1Q14549 363 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 TPSAB1Q15661 275 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.46□□□□□ -0.25
SHMT2-226ENST00000556825 WSCD2Q2TBF2 565 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 LGALSLQ3ZCW2 172 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-226ENST00000556825 GLYR1Q49A26 553 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-226ENST00000556825 FAM98BQ52LJ0 330 aaKnown RBP13.46□□□□□ -0.25
SHMT2-226ENST00000556825 ODR4Q5SWX8 454 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 ANGPTL8Q6UXH0 198 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 MCATQ8IVS2 390 aaKnown RBP13.46□□□□□ -0.25
SHMT2-226ENST00000556825 TMEM151AQ8N4L1 468 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 EIF4E3Q8N5X7 224 aaKnown RBP13.46□□□□□ -0.25
SHMT2-226ENST00000556825 OR11H4Q8NGC9 324 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 ADAMTS19Q8TE59 1207 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 EXOSC8Q96B26 276 aaKnown RBP13.46□□□□□ -0.25
SHMT2-226ENST00000556825 CMTM3Q96MX0 182 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 CHCHD6Q9BRQ6 235 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 MARVELD1Q9BSK0 173 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 LMAN2LQ9H0V9 348 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 GTSE1Q9NYZ3 720 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 RUVBL2Q9Y230 463 aaKnown RBP13.46□□□□□ -0.25
SHMT2-226ENST00000556825 ORC6Q9Y5N6 252 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 UBR3Q6ZT12 1888 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.45□□□□□ -0.26
SHMT2-226ENST00000556825 A0A1B0GV90 55 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 TCRBV5S1A1TA0A578 114 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 NR5A2O00482 541 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 HCN1O60741 890 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 CKMT1AP12532 417 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 TM4SF1P30408 202 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 SPRP35270 261 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-226ENST00000556825 ZNF81P51508 661 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 EEFSECP57772 596 aaKnown RBP13.45□□□□□ -0.26
SHMT2-226ENST00000556825 CHAF1BQ13112 559 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 USP10Q14694 798 aaKnown RBP13.45□□□□□ -0.26
SHMT2-226ENST00000556825 TOMM20Q15388 145 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 DNAJC24Q6P3W2 148 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 NPNTQ6UXI9 565 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 DLEU7Q6UYE1 221 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 PAQR7Q86WK9 346 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 ABI1Q8IZP0 508 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 HS3ST5Q8IZT8 346 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 LRRC17Q8N6Y2 441 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 BVESQ8NE79 360 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 ELP5Q8TE02 316 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 BTN2A2Q8WVV5 523 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 LPAR1Q92633 364 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 MRGPRX2Q96LB1 330 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 SENP8Q96LD8 212 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 CBWD1Q9BRT8 395 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 PDCD10Q9BUL8 212 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 CPEB1Q9BZB8 566 aaKnown RBP13.45□□□□□ -0.26
SHMT2-226ENST00000556825 ACTR6Q9GZN1 396 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 RBFOX1Q9NWB1 397 aaKnown RBP13.45□□□□□ -0.26
SHMT2-226ENST00000556825 HSPBP1Q9NZL4 362 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 AASSQ9UDR5 926 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 KLK4Q9Y5K2 254 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 PIAS3Q9Y6X2 628 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 TP53BP1Q12888 1972 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-226ENST00000556825 A0A0J9YYE9 177 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 K7ERI5 159 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 GPR37O15354 613 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 MYCLP12524 364 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-226ENST00000556825 HTR1EP28566 365 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 HNMTP50135 292 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 KCNQ1P51787 676 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 CHRNB3Q05901 458 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 C2orf80Q0P641 193 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 VEPH1Q14D04 833 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 HADHQ16836 314 aaKnown RBP13.45□□□□□ -0.26
SHMT2-226ENST00000556825 NHLRC3Q5JS37 347 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 LCN1P1Q5VSP4 162 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 MZT2BQ6NZ67 158 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 KCTD6Q8NC69 237 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 ELMO3Q96BJ8 720 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 MRPL4Q9BYD3 311 aaKnown RBP13.45□□□□□ -0.26
SHMT2-226ENST00000556825 DNTTIP1Q9H147 329 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 TFCP2L1Q9NZI6 479 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 EXTL2Q9UBQ6 330 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 PTCH2Q9Y6C5 1203 aa13.45□□□□□ -0.26
SHMT2-226ENST00000556825 TISP43B9A030 160 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 AIPO00170 330 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 PDCD5O14737 125 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 SCAMP1O15126 338 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 PLOD3O60568 738 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 PRKRAO75569 313 aaKnown RBP13.44□□□□□ -0.26
SHMT2-226ENST00000556825 OAZ2O95190 189 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 HOXB8P17481 243 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-226ENST00000556825 CAPN3P20807 821 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 ACADLP28330 430 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 ICAM3P32942 547 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 ACTR1BP42025 376 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms