RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	CETN2	P41208	172 aa		12.06	□□□□□ -0.48
SHMT2-223	ENST00000556689	SRSF11	Q05519	484 aa	Known RBP	12.06	□□□□□ -0.48
SHMT2-223	ENST00000556689	MUM1	Q2TAK8	710 aa		12.06	□□□□□ -0.48
SHMT2-223	ENST00000556689	FRMPD2B	Q6IN97	320 aa		12.06	□□□□□ -0.48
SHMT2-223	ENST00000556689	C11orf63	Q6NUN7	778 aa		12.06	□□□□□ -0.48
SHMT2-223	ENST00000556689	CNST	Q6PJW8	725 aa		12.06	□□□□□ -0.48
SHMT2-223	ENST00000556689	RIPOR1	Q6ZS17	1223 aa		12.06	□□□□□ -0.48
SHMT2-223	ENST00000556689	ZNF295-AS1	Q8N0V1	137 aa		12.06	□□□□□ -0.48
SHMT2-223	ENST00000556689	RAB42	Q8N4Z0	105 aa		12.06	□□□□□ -0.48
SHMT2-223	ENST00000556689	HDAC10	Q969S8	669 aa		12.06	□□□□□ -0.48
SHMT2-223	ENST00000556689	YIPF2	Q9BWQ6	316 aa		12.06	□□□□□ -0.48
SHMT2-223	ENST00000556689	CARD6	Q9BX69	1037 aa		12.06	□□□□□ -0.48
SHMT2-223	ENST00000556689	RAB11FIP5	Q9BXF6	653 aa		12.06	□□□□□ -0.48
SHMT2-223	ENST00000556689	STMN3	Q9NZ72	180 aa		12.06	□□□□□ -0.48
SHMT2-223	ENST00000556689	STOX2	Q9P2F5	926 aa	Predicted RBP	12.06	□□□□□ -0.48
SHMT2-223	ENST00000556689	CDC14A	Q9UNH5	594 aa		12.06	□□□□□ -0.48
SHMT2-223	ENST00000556689	KLK4	Q9Y5K2	254 aa		12.06	□□□□□ -0.48
SHMT2-223	ENST00000556689	CELSR1	Q9NYQ6	3014 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	LOC105369274	A0A096LPK9	316 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	IGHV1-45	A0A0A0MS14	117 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	LOC102723532	A0A0G2JNH3	316 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689		A0A1W2PQ72	361 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	IQCF5	A8MTL0	148 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	IDS	B3KWA1	339 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	PRAMEF2	O60811	474 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	SLCO2B1	O94956	709 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	GOT2	P00505	430 aa	Known RBP	12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	HEXB	P07686	556 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	ESRRA	P11474	423 aa	Predicted RBP	12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	AGA	P20933	346 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	CTNNA1	P35221	906 aa	Known RBP	12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	PTPN7	P35236	360 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	PPARG	P37231	505 aa	Predicted RBP	12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	SMS	P52788	366 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	AP2B1	P63010	937 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	CCDC38	Q502W7	563 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	ABHD17B	Q5VST6	288 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	FBXO42	Q6P3S6	717 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	OR4N4	Q8N0Y3	316 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	FAM71D	Q8N9W8	422 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	GSDMB	Q8TAX9	411 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	RAD51AP1	Q96B01	352 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	MIPEP	Q99797	713 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	RNF32	Q9H0A6	362 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	RIC8B	Q9NVN3	520 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	TRPC4	Q9UBN4	977 aa		12.05	□□□□□ -0.48
SHMT2-223	ENST00000556689	PRPF4	O43172	522 aa	Known RBP eCLIP	12.04	□□□□□ -0.48	3e-10	■■□□□ 12.6
SHMT2-223	ENST00000556689	SLC19A2	O60779	497 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	GAS8	O95995	478 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	ERVK-10	P10266	1014 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	CAPN3	P20807	821 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	AOAH	P28039	575 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	EMP3	P54852	163 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	RWDD2B	P57060	319 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	EEF1A2	Q05639	463 aa	Known RBP	12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	LONRF1	Q17RB8	773 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	PRTG	Q2VWP7	1150 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	FAAH2	Q6GMR7	532 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	HIBCH	Q6NVY1	386 aa	Predicted RBP	12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	AFTPH	Q6ULP2	937 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	LINC00523	Q86TU6	105 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	DNAAF3	Q8N9W5	541 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	SPC24	Q8NBT2	197 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	OR2L3	Q8NG85	312 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	OR13J1	Q8NGT2	312 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	OR2A1	Q8NGT9	310 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	OR6P1	Q8NGX9	317 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	OR4L1	Q8NH43	312 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	CABS1	Q96KC9	395 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	TTC7A	Q9ULT0	858 aa	Predicted RBP	12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	TFR2	Q9UP52	801 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	PCDHA13	Q9Y5I0	950 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	MRFAP1	Q9Y605	127 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	C2CD3	Q4AC94	2353 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	NUP210L	Q5VU65	1888 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	DCHS2	Q6V1P9	2916 aa		12.04	□□□□□ -0.48
SHMT2-223	ENST00000556689	OR5H15	A6NDH6	313 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	AKR1B15	C9JRZ8	316 aa	Predicted RBP	12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	C1orf105	O95561	183 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	CELA2A	P08217	269 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	ITGAM	P11215	1152 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	PSMB5	P28074	263 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	ADORA2A-AS1	P86434	159 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	DSG2	Q14126	1118 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	NAA25	Q14CX7	972 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	TMED2	Q15363	201 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	C3AR1	Q16581	482 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	P3H1	Q32P28	736 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	FASTKD1	Q53R41	847 aa	Known RBP	12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	TSTD2	Q5T7W7	516 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	RNF44	Q7L0R7	432 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	KRT222	Q8N1A0	295 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	OR52K1	Q8NGK4	314 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	HMGCLL1	Q8TB92	370 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	LKAAEAR1	Q8TD35	194 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	MAGEC3	Q8TD91	643 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	ADAMTS18	Q8TE60	1221 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	MTFMT	Q96DP5	389 aa	Known RBP	12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	TRIM44	Q96DX7	344 aa	Predicted RBP	12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	MVB12A	Q96EY5	273 aa		12.03	□□□□□ -0.48

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