RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 CHAC2Q8WUX2 184 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 TRIM63Q969Q1 353 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 MUL1Q969V5 352 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 VOPP1Q96AW1 172 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 ROPN1LQ96C74 230 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 HSPA12BQ96MM6 686 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 TSGA13Q96PP4 275 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 SNX18Q96RF0 628 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 SLC39A3Q9BRY0 314 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 TM6SF2Q9BZW4 377 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 LRRC40Q9H9A6 602 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 CAB39LQ9H9S4 337 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 ABCB10Q9NRK6 738 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 SEMA4GQ9NTN9 838 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 PIH1D1Q9NWS0 290 aaKnown RBP7.47□□□□□ -1.21
LIMA1-216ENST00000552909 FBXL12Q9NXK8 326 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 GMPR2Q9P2T1 348 aaKnown RBP7.47□□□□□ -1.21
LIMA1-216ENST00000552909 MOSPD1Q9UJG1 213 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 ZNF221Q9UK13 617 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 GPSM3Q9Y4H4 160 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 SNX5Q9Y5X3 404 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 CABIN1Q9Y6J0 2220 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 TMEM233B4DJY2 109 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 J3KR12 359 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 MATN3O15232 486 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 KDELR3O43731 214 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 GPC4O75487 556 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 GABARAPO95166 117 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 IGLV3-19P01714 112 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 OXTRP30559 389 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 DRD3P35462 400 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 GRK3P35626 688 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 MPLP40238 635 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 GABARAPL2P60520 117 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 MRPS15P82914 257 aaKnown RBP7.46□□□□□ -1.21
LIMA1-216ENST00000552909 SERINC3Q13530 473 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 PRPSAP1Q14558 356 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 ZNF181Q2M3W8 571 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 CEP78Q5JTW2 689 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 SPANXN3Q5MJ09 141 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 RETSATQ6NUM9 610 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 FKBP9P1Q75LS8 142 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 THAP5Q7Z6K1 395 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 GRAMD2AQ8IUY3 354 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 LYSMD2Q8IV50 215 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 SLC38A6Q8IZM9 456 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 POC5Q8NA72 575 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 LSM14AQ8ND56 463 aaKnown RBP7.46□□□□□ -1.21
LIMA1-216ENST00000552909 OR6K2Q8NGY2 324 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 ATL1Q8WXF7 558 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 PIGKQ92643 395 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 GLMNQ92990 594 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 ZNF419Q96HQ0 510 aaPredicted RBP7.46□□□□□ -1.21
LIMA1-216ENST00000552909 LOXL4Q96JB6 756 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 SCYL1Q96KG9 808 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 C6orf106Q9H6K1 298 aaPredicted RBP7.46□□□□□ -1.21
LIMA1-216ENST00000552909 RETREG1Q9H6L5 497 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 CCDC177Q9NQR7 707 aaPredicted RBP7.46□□□□□ -1.21
LIMA1-216ENST00000552909 ACTR3BQ9P1U1 418 aa7.46□□□□□ -1.21
LIMA1-216ENST00000552909 RABL2AQ9UBK7 228 aaPredicted RBP7.46□□□□□ -1.21
LIMA1-216ENST00000552909 ADAMTS9Q9P2N4 1935 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 TTC24A2A3L6 582 aaPredicted RBP7.46□□□□□ -1.22
LIMA1-216ENST00000552909 AP3B1O00203 1094 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 NDUFS2O75306 463 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 KCNK2O95069 426 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 MFN2O95140 757 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 PTTG1O95997 202 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 LDLRP01130 860 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 GFAPP14136 432 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 PSMB4P28070 264 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 SHMT2P34897 504 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 CYP51A1Q16850 503 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 TIGD7Q6NT04 549 aaPredicted RBP7.46□□□□□ -1.22
LIMA1-216ENST00000552909 ZCCHC8Q6NZY4 707 aaKnown RBP7.46□□□□□ -1.22
LIMA1-216ENST00000552909 PRMT9Q6P2P2 845 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 C22orf39Q6P5X5 142 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 CES3Q6UWW8 571 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 SLC36A4Q6YBV0 504 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 PRR23CQ6ZRP0 262 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 CCDC103Q8IW40 242 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 HDDC3Q8N4P3 179 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 AFAP1L2Q8N4X5 818 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 CCNYL1Q8N7R7 359 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 SIMC1Q8NDZ2 872 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 OR13J1Q8NGT2 312 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 RHOXF1Q8NHV9 184 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 GANCQ8TET4 914 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 FIG4Q92562 907 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 HDAC2Q92769 488 aaKnown RBP7.46□□□□□ -1.22
LIMA1-216ENST00000552909 CHID1Q9BWS9 393 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 FBRSQ9HAH7 460 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 NECTIN3Q9NQS3 549 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 FSCN3Q9NQT6 498 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 RBM22Q9NW64 420 aaKnown RBP eCLIP7.46□□□□□ -1.22
LIMA1-216ENST00000552909 SYBUQ9NX95 663 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 EGFL7Q9UHF1 273 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 TLK1Q9UKI8 766 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 TRHDEQ9UKU6 1024 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 ANKRD6Q9Y2G4 727 aa7.46□□□□□ -1.22
LIMA1-216ENST00000552909 ASCC3Q8N3C0 2202 aaKnown RBP7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms