RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ZNF24P17028 368 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 GTF2E2P29084 291 aaKnown RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 BMPR1AP36894 532 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 NR4A2P43354 598 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 OR1G1P47890 313 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 ST13P50502 369 aaKnown RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 CRISP3P54108 245 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 CDC20Q12834 499 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 KEAP1Q14145 624 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 CPSF6Q16630 551 aaKnown RBP eCLIP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 LRIT3Q3SXY7 679 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 C5orf22Q49AR2 442 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 IQCCQ4KMZ1 466 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 CLLU1OSQ5K130 101 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 ATAD3BQ5T9A4 648 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 OR2T5Q6IEZ7 315 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 DOK6Q6PKX4 331 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 FAM151BQ6UXP7 276 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 RNF19BQ6ZMZ0 732 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 UTS2BQ765I0 119 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 PRSS48Q7RTY5 328 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 RASAL3Q86YV0 1011 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 LACC1Q8IV20 430 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 PSD4Q8NDX1 1056 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 OR2T29Q8NH02 315 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 DNAJB8Q8NHS0 232 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 MCFD2Q8NI22 146 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 USP7Q93009 1102 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 WBP2Q969T9 261 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 FUBP3Q96I24 572 aaKnown RBP eCLIP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 UROC1Q96N76 676 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 CTRCQ99895 268 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 EGFL8Q99944 293 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 DPH2Q9BQC3 489 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 CD244Q9BZW8 370 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 KCNH6Q9H252 994 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 DCSTAMPQ9H295 470 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 AMBNQ9NP70 447 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 IL1RAPQ9NPH3 570 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 TMEM184CQ9NVA4 438 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 WWOXQ9NZC7 414 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 ERVW-1Q9UQF0 538 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 MAN2B2Q9Y2E5 1009 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 ZNF451Q9Y4E5 1061 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 PCDHB5Q9Y5E4 795 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 LAMA2P24043 3122 aaKnown RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 H0Y626 953 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 SLC28A1O00337 649 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 SCAMP3O14828 347 aaKnown RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 YY2O15391 372 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 ACSL4O60488 711 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 PRAMEF4O60810 478 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 NBNO60934 754 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 ERN1O75460 977 aaKnown RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 SLC25A14O95258 325 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 TRIM16O95361 564 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 VIPP01282 170 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 SDC1P18827 310 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 EFNA1P20827 205 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 TCEA1P23193 301 aaKnown RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 GADD45AP24522 165 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 ARHGDIAP52565 204 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 CRYBA2P53672 197 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 RPS14P62263 151 aaKnown RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 RPP38P78345 283 aaKnown RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 RING1Q06587 406 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 DSC1Q08554 894 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 DOC2BQ14184 412 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 NFE2Q16621 373 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 PLEKHG6Q3KR16 790 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 C6orf183Q5T699 404 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 ATXN7L2Q5T6C5 722 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 CACHD1Q5VU97 1274 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 PRAMEF9Q5VWM5 478 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 PTRHD1Q6GMV3 140 aaKnown RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 OR4F3Q6IEY1 312 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 RNF165Q6ZSG1 346 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 USP50Q70EL3 339 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 C16orf59Q7L2K0 433 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 SERPINA9Q86WD7 417 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 DENND1CQ8IV53 801 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 RAVER1Q8IY67 606 aaKnown RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 ENTHD1Q8IYW4 607 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 ADGRG2Q8IZP9 1017 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 CLIP4Q8N3C7 705 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 SVOPQ8N4V2 548 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 KIAA1958Q8N8K9 716 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 PROX1Q92786 737 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 ZHX1-C8orf76Q96EF9 292 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 APIPQ96GX9 242 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 CEP295NLQ96MC4 621 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 DACH2Q96NX9 599 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 PARK7Q99497 189 aaKnown RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 SEPT5Q99719 369 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 HOXD1Q9GZZ0 328 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 EHD1Q9H4M9 534 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 SP140LQ9H930 580 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 CPNE5Q9HCH3 593 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 ANKHQ9HCJ1 492 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms