RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 DEFB103AP81534 67 aa15.85■□□□□ 0.13
CUX1-213ENST00000549414 GRM2Q14416 872 aa15.85■□□□□ 0.13
CUX1-213ENST00000549414 PCBP2Q15366 365 aaKnown RBP eCLIP15.85■□□□□ 0.132e-6■■■■■ 33.7
CUX1-213ENST00000549414 PRAMEF14Q5SWL7 426 aa15.85■□□□□ 0.13
CUX1-213ENST00000549414 PDZK1Q5T2W1 519 aa15.85■□□□□ 0.13
CUX1-213ENST00000549414 PRAMEF13Q5VWM6 474 aa15.85■□□□□ 0.13
CUX1-213ENST00000549414 CASD1Q96PB1 797 aa15.85■□□□□ 0.13
CUX1-213ENST00000549414 KATNBL1Q9H079 304 aa15.85■□□□□ 0.13
CUX1-213ENST00000549414 C3orf14Q9HBI5 128 aa15.85■□□□□ 0.13
CUX1-213ENST00000549414 HCFC1R1Q9NWW0 138 aa15.85■□□□□ 0.13
CUX1-213ENST00000549414 HMX2A2RU54 273 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 HTRA2O43464 458 aaPredicted RBP15.84■□□□□ 0.13
CUX1-213ENST00000549414 MAGEA3P43357 314 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 ERVPABLB-1P60509 514 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 TLR1Q15399 786 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 KLHL12Q53G59 568 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 RNF44Q7L0R7 432 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 LINC00597Q9H2U6 94 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 MAP10Q9P2G4 905 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 UBR3Q6ZT12 1888 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 HHLA1C9JL84 531 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 CREG1O75629 220 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 IL7RP16871 459 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 ACRV1P26436 265 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 OR4D2P58180 307 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 MTAPQ13126 283 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 DPY19L1Q2PZI1 675 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 GALNT18Q6P9A2 607 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 SGIP1Q9BQI5 828 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 AKAP7Q9P0M2 348 aaPredicted RBP15.84■□□□□ 0.13
CUX1-213ENST00000549414 VIPP01282 170 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 ZNF8P17098 575 aaPredicted RBP15.84■□□□□ 0.13
CUX1-213ENST00000549414 FSHRP23945 695 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 EIF2B2P49770 351 aaKnown RBP15.84■□□□□ 0.13
CUX1-213ENST00000549414 SMIM11AP58511 58 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 TOMM20Q15388 145 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 ZNF423Q2M1K9 1284 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 KCTD11Q693B1 232 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 WFIKKN2Q8TEU8 576 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 NRG4Q8WWG1 115 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 TOP1MTQ969P6 601 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 SLC35A5Q9BS91 424 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 EFCAB11Q9BUY7 163 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 TRMT61BQ9BVS5 477 aaKnown RBP15.84■□□□□ 0.13
CUX1-213ENST00000549414 SLC29A3Q9BZD2 475 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 WDR26Q9H7D7 661 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 CCNB1IP1Q9NPC3 277 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 IL26Q9NPH9 171 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 C11orf16Q9NQ32 467 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 ZCCHC3Q9NUD5 404 aaKnown RBP15.84■□□□□ 0.13
CUX1-213ENST00000549414 AIG1Q9NVV5 245 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 KELP23276 732 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 IFI44LQ53G44 452 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 CELF5Q8N6W0 485 aaKnown RBP15.84■□□□□ 0.13
CUX1-213ENST00000549414 ZNF655Q8N720 491 aaPredicted RBP15.84■□□□□ 0.13
CUX1-213ENST00000549414 MCFD2Q8NI22 146 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 TPT1P8Q9HAU6 139 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 PCTPQ9UKL6 214 aa15.84■□□□□ 0.13
CUX1-213ENST00000549414 COL5A3P25940 1745 aaPredicted RBP15.83■□□□□ 0.13
CUX1-213ENST00000549414 ZNF30P17039 623 aa15.83■□□□□ 0.13
CUX1-213ENST00000549414 VIPR2P41587 438 aa15.83■□□□□ 0.13
CUX1-213ENST00000549414 XKR4Q5GH76 650 aa15.83■□□□□ 0.13
CUX1-213ENST00000549414 PIGGQ5H8A4 983 aa15.83■□□□□ 0.13
CUX1-213ENST00000549414 POC5Q8NA72 575 aa15.83■□□□□ 0.13
CUX1-213ENST00000549414 C19orf18Q8NEA5 215 aa15.83■□□□□ 0.13
CUX1-213ENST00000549414 OR5K1Q8NHB7 308 aa15.83■□□□□ 0.13
CUX1-213ENST00000549414 CLSTN3Q9BQT9 956 aa15.83■□□□□ 0.13
CUX1-213ENST00000549414 CARS2Q9HA77 564 aaKnown RBP15.83■□□□□ 0.13
CUX1-213ENST00000549414 IL17CQ9P0M4 197 aa15.83■□□□□ 0.13
CUX1-213ENST00000549414 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.83■□□□□ 0.12
CUX1-213ENST00000549414 PDYNP01213 254 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 BCKDHAP12694 445 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 ACTR1BP42025 376 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 CTSOP43234 321 aaPredicted RBP15.83■□□□□ 0.12
CUX1-213ENST00000549414 ACTR1AP61163 376 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 PDCD4Q53EL6 469 aaKnown RBP15.83■□□□□ 0.12
CUX1-213ENST00000549414 SLC39A5Q6ZMH5 540 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 TAF8Q7Z7C8 310 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 SVOPLQ8N434 492 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 TMEM145Q8NBT3 493 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 ZNF514Q96K75 400 aaPredicted RBP15.83■□□□□ 0.12
CUX1-213ENST00000549414 C3orf30Q96M34 536 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 HDHD2Q9H0R4 259 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 SPTBN2O15020 2390 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 M0QX08 132 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 ADAMDEC1O15204 470 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 SNAP29O95721 258 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 TALDO1P37837 337 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 TAS2R50P59544 299 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 CYP27C1Q4G0S4 372 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 NADSYN1Q6IA69 706 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 KLHDC10Q6PID8 442 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 FAM20CQ8IXL6 584 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 TEX47Q8TBZ9 253 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 ARMC5Q96C12 935 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 CHCHD6Q9BRQ6 235 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 ITM2CQ9NQX7 267 aa15.83■□□□□ 0.12
CUX1-213ENST00000549414 RYKP34925 604 aa15.82■□□□□ 0.12
CUX1-213ENST00000549414 COPZ1P61923 177 aa15.82■□□□□ 0.12
CUX1-213ENST00000549414 RAB33AQ14088 237 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms