RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 EFR3BQ9Y2G0 817 aa16.12■□□□□ 0.17
VPS29-204ENST00000548259 CCDC88CQ9P219 2028 aa16.12■□□□□ 0.17
VPS29-204ENST00000548259 NUP210LQ5VU65 1888 aa16.12■□□□□ 0.17
VPS29-204ENST00000548259 DCHS2Q6V1P9 2916 aa16.12■□□□□ 0.17
VPS29-204ENST00000548259 DOCK10Q96BY6 2186 aa16.11■□□□□ 0.17
VPS29-204ENST00000548259 IGLV3-12A0A075B6K2 115 aa16.11■□□□□ 0.17
VPS29-204ENST00000548259 IGHV1-45A0A0A0MS14 117 aa16.11■□□□□ 0.17
VPS29-204ENST00000548259 A0A1W2PQ72 361 aa16.11■□□□□ 0.17
VPS29-204ENST00000548259 PSMD3O43242 534 aa16.11■□□□□ 0.17
VPS29-204ENST00000548259 PRICKLE3O43900 615 aaPredicted RBP16.11■□□□□ 0.17
VPS29-204ENST00000548259 VPS26AO75436 327 aa16.11■□□□□ 0.17
VPS29-204ENST00000548259 F10P00742 488 aa16.11■□□□□ 0.17
VPS29-204ENST00000548259 ANXA5P08758 320 aa16.11■□□□□ 0.17
VPS29-204ENST00000548259 EEF1A2Q05639 463 aaKnown RBP16.11■□□□□ 0.17
VPS29-204ENST00000548259 DSG2Q14126 1118 aa16.11■□□□□ 0.17
VPS29-204ENST00000548259 TESK1Q15569 626 aa16.11■□□□□ 0.17
VPS29-204ENST00000548259 CAVIN1Q6NZI2 390 aaKnown RBP16.11■□□□□ 0.17
VPS29-204ENST00000548259 THAP3Q8WTV1 239 aaPredicted RBP16.11■□□□□ 0.17
VPS29-204ENST00000548259 RAD51AP1Q96B01 352 aa16.11■□□□□ 0.17
VPS29-204ENST00000548259 MCCC2Q9HCC0 563 aa16.11■□□□□ 0.17
VPS29-204ENST00000548259 A0A0J9YVX5 310 aa16.1■□□□□ 0.17
VPS29-204ENST00000548259 TTI1O43156 1089 aa16.1■□□□□ 0.17
VPS29-204ENST00000548259 CTSVO60911 334 aa16.1■□□□□ 0.17
VPS29-204ENST00000548259 PHF2O75151 1096 aa16.1■□□□□ 0.17
VPS29-204ENST00000548259 TPH1P17752 444 aa16.1■□□□□ 0.17
VPS29-204ENST00000548259 EMP3P54852 163 aa16.1■□□□□ 0.17
VPS29-204ENST00000548259 HADHBP55084 474 aaKnown RBP16.1■□□□□ 0.17
VPS29-204ENST00000548259 ADORA2A-AS1P86434 159 aa16.1■□□□□ 0.17
VPS29-204ENST00000548259 TLE4Q04727 773 aa16.1■□□□□ 0.17
VPS29-204ENST00000548259 ZNF33BQ06732 778 aa16.1■□□□□ 0.17
VPS29-204ENST00000548259 C3AR1Q16581 482 aa16.1■□□□□ 0.17
VPS29-204ENST00000548259 PARP6Q2NL67 630 aa16.1■□□□□ 0.17
VPS29-204ENST00000548259 ZNF766Q5HY98 468 aa16.1■□□□□ 0.17
VPS29-204ENST00000548259 MAGEC3Q8TD91 643 aa16.1■□□□□ 0.17
VPS29-204ENST00000548259 METTL21AQ8WXB1 218 aa16.1■□□□□ 0.17
VPS29-204ENST00000548259 IL17FQ96PD4 163 aa16.1■□□□□ 0.17
VPS29-204ENST00000548259 TUBB6Q9BUF5 446 aa16.1■□□□□ 0.17
VPS29-204ENST00000548259 MENTQ9BUN1 341 aa16.1■□□□□ 0.17
VPS29-204ENST00000548259 MKKSQ9NPJ1 570 aaPredicted RBP16.1■□□□□ 0.17
VPS29-204ENST00000548259 PCDHGB6Q9Y5F9 930 aa16.1■□□□□ 0.17
VPS29-204ENST00000548259 KLK4Q9Y5K2 254 aa16.1■□□□□ 0.17
VPS29-204ENST00000548259 RCCD1A6NED2 376 aa16.09■□□□□ 0.17
VPS29-204ENST00000548259 FAM227AF5H4B4 570 aa16.09■□□□□ 0.17
VPS29-204ENST00000548259 CCR7P32248 378 aa16.09■□□□□ 0.17
VPS29-204ENST00000548259 P3H1Q32P28 736 aa16.09■□□□□ 0.17
VPS29-204ENST00000548259 AFTPHQ6ULP2 937 aa16.09■□□□□ 0.17
VPS29-204ENST00000548259 LINC00523Q86TU6 105 aa16.09■□□□□ 0.17
VPS29-204ENST00000548259 SPPL2CQ8IUH8 684 aa16.09■□□□□ 0.17
VPS29-204ENST00000548259 SKA2Q8WVK7 121 aaPredicted RBP16.09■□□□□ 0.17
VPS29-204ENST00000548259 FOPNLQ96NB1 174 aa16.09■□□□□ 0.17
VPS29-204ENST00000548259 CHP1Q99653 195 aa16.09■□□□□ 0.17
VPS29-204ENST00000548259 MIPEPQ99797 713 aa16.09■□□□□ 0.17
VPS29-204ENST00000548259 ZFYVE21Q9BQ24 234 aa16.09■□□□□ 0.17
VPS29-204ENST00000548259 MESP1Q9BRJ9 268 aa16.09■□□□□ 0.17
VPS29-204ENST00000548259 CARD6Q9BX69 1037 aa16.09■□□□□ 0.17
VPS29-204ENST00000548259 ZNF700Q9H0M5 742 aa16.09■□□□□ 0.17
VPS29-204ENST00000548259 ABHD10Q9NUJ1 306 aa16.09■□□□□ 0.17
VPS29-204ENST00000548259 UTP6Q9NYH9 597 aaKnown RBP16.09■□□□□ 0.17
VPS29-204ENST00000548259 CIDEBQ9UHD4 219 aa16.09■□□□□ 0.17
VPS29-204ENST00000548259 TINAGQ9UJW2 476 aa16.09■□□□□ 0.17
VPS29-204ENST00000548259 AKAP9Q99996 3911 aa16.09■□□□□ 0.17
VPS29-204ENST00000548259 CCDC162PA2VCL2 907 aa16.08■□□□□ 0.16
VPS29-204ENST00000548259 MROH6A6NGR9 719 aa16.08■□□□□ 0.16
VPS29-204ENST00000548259 PJA2O43164 708 aa16.08■□□□□ 0.16
VPS29-204ENST00000548259 CBFA2T2O43439 604 aa16.08■□□□□ 0.16
VPS29-204ENST00000548259 TJP3O95049 919 aa16.08■□□□□ 0.16
VPS29-204ENST00000548259 PTMAP06454 111 aaKnown RBP16.08■□□□□ 0.16
VPS29-204ENST00000548259 CMPK1P30085 196 aa16.08■□□□□ 0.16
VPS29-204ENST00000548259 FOXN2P32314 431 aa16.08■□□□□ 0.16
VPS29-204ENST00000548259 CCNFP41002 786 aa16.08■□□□□ 0.16
VPS29-204ENST00000548259 ALDH6A1Q02252 535 aaKnown RBP16.08■□□□□ 0.16
VPS29-204ENST00000548259 AARS2Q5JTZ9 985 aaKnown RBP16.08■□□□□ 0.16
VPS29-204ENST00000548259 FRMPD2BQ6IN97 320 aa16.08■□□□□ 0.16
VPS29-204ENST00000548259 NEK10Q6ZWH5 1172 aa16.08■□□□□ 0.16
VPS29-204ENST00000548259 LAPTM4BQ86VI4 370 aa16.08■□□□□ 0.16
VPS29-204ENST00000548259 KLHDC8BQ8IXV7 354 aa16.08■□□□□ 0.16
VPS29-204ENST00000548259 FAM98AQ8NCA5 519 aaKnown RBP16.08■□□□□ 0.16
VPS29-204ENST00000548259 OR2L3Q8NG85 312 aa16.08■□□□□ 0.16
VPS29-204ENST00000548259 ZNF354BQ96LW1 612 aa16.08■□□□□ 0.16
VPS29-204ENST00000548259 GPR137Q96N19 417 aa16.08■□□□□ 0.16
VPS29-204ENST00000548259 TGIF2Q9GZN2 237 aa16.08■□□□□ 0.16
VPS29-204ENST00000548259 ANAPC5Q9UJX4 755 aa16.08■□□□□ 0.16
VPS29-204ENST00000548259 MEMO1Q9Y316 297 aa16.08■□□□□ 0.16
VPS29-204ENST00000548259 LOC102723996A0A087X1L8 192 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 TXNDC9O14530 226 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 KPNA5O15131 536 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 OR1I1O60431 355 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 GPC4O75487 556 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 ITGAMP11215 1152 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 ABOP16442 354 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 PSMA3P25788 255 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 ANP32AP39687 249 aaKnown RBP16.07■□□□□ 0.16
VPS29-204ENST00000548259 MARCKSL1P49006 195 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 GRB7Q14451 532 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 FASTKD1Q53R41 847 aaKnown RBP16.07■□□□□ 0.16
VPS29-204ENST00000548259 GARNL3Q5VVW2 1013 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 KCTD11Q693B1 232 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 C11orf63Q6NUN7 778 aa16.07■□□□□ 0.16
VPS29-204ENST00000548259 Q6ZPB1 254 aaPredicted RBP16.07■□□□□ 0.16
VPS29-204ENST00000548259 RNF44Q7L0R7 432 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms