RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 PRAMEF17Q5VTA0 474 aa12.5□□□□□ -0.41
PTCH1-212ENST00000546744 PRAMEF18Q5VWM3 479 aa12.5□□□□□ -0.41
PTCH1-212ENST00000546744 LRRC66Q68CR7 880 aa12.5□□□□□ -0.41
PTCH1-212ENST00000546744 OTOP3Q7RTS5 596 aa12.5□□□□□ -0.41
PTCH1-212ENST00000546744 FAM109AQ8N4B1 249 aa12.5□□□□□ -0.41
PTCH1-212ENST00000546744 OR52J3Q8NH60 311 aa12.5□□□□□ -0.41
PTCH1-212ENST00000546744 RHEBL1Q8TAI7 183 aa12.5□□□□□ -0.41
PTCH1-212ENST00000546744 NRG4Q8WWG1 115 aa12.5□□□□□ -0.41
PTCH1-212ENST00000546744 TSNAXQ99598 290 aaKnown RBP12.5□□□□□ -0.41
PTCH1-212ENST00000546744 NPLQ9BXD5 320 aaPredicted RBP12.5□□□□□ -0.41
PTCH1-212ENST00000546744 APOBEC3GQ9HC16 384 aaKnown RBP12.5□□□□□ -0.41
PTCH1-212ENST00000546744 TREM1Q9NP99 234 aa12.5□□□□□ -0.41
PTCH1-212ENST00000546744 SLC39A1Q9NY26 324 aa12.5□□□□□ -0.41
PTCH1-212ENST00000546744 ANXA2P2A6NMY6 339 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 LRRTM2O43300 516 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 BUD23O43709 281 aaKnown RBP12.49□□□□□ -0.41
PTCH1-212ENST00000546744 SLC25A14O95258 325 aaPredicted RBP12.49□□□□□ -0.41
PTCH1-212ENST00000546744 CST3P01034 146 aaPredicted RBP12.49□□□□□ -0.41
PTCH1-212ENST00000546744 ANXA2P07355 339 aaKnown RBP12.49□□□□□ -0.41
PTCH1-212ENST00000546744 TAF13Q15543 124 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 CRB2Q5IJ48 1285 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 HACD4Q5VWC8 232 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 SLC15A3Q8IY34 581 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 C1orf127Q8N9H9 656 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 SPPL2BQ8TCT7 592 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 ZBED6CLQ96FA7 236 aaPredicted RBP12.49□□□□□ -0.41
PTCH1-212ENST00000546744 CHMP1AQ9HD42 196 aaPredicted RBP12.49□□□□□ -0.41
PTCH1-212ENST00000546744 PCDHB16Q9NRJ7 776 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 ZNF358Q9NW07 568 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 HPF1Q9NWY4 346 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 C4AP0C0L4 1744 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 TRAPPC13A5PLN9 417 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 BCAS1O75363 584 aaPredicted RBP12.49□□□□□ -0.41
PTCH1-212ENST00000546744 EEDO75530 441 aaKnown RBP12.49□□□□□ -0.41
PTCH1-212ENST00000546744 MATN4O95460 622 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 HOXD8P13378 290 aaPredicted RBP12.49□□□□□ -0.41
PTCH1-212ENST00000546744 SPAM1P38567 509 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 OPRL1P41146 370 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 APLP1P51693 650 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 CRISP3P54108 245 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 GPR33Q49SQ1 333 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 C9orf57Q5W0N0 161 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 PDE12Q6L8Q7 609 aaKnown RBP12.49□□□□□ -0.41
PTCH1-212ENST00000546744 LRRC70Q7Z2Q7 622 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 SDR16C5Q8N3Y7 309 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 C12orf29Q8N999 325 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 DENND6BQ8NEG7 585 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 VANGL1Q8TAA9 524 aaPredicted RBP12.49□□□□□ -0.41
PTCH1-212ENST00000546744 MGLLQ99685 303 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 ZFYVE1Q9HBF4 777 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 C11orf16Q9NQ32 467 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 DPP7Q9UHL4 492 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 A3GALT2U3KPV4 340 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 CASTOR2A6NHX0 329 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 ISM1B1AKI9 464 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 RASGRP1O95267 797 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 AGR2O95994 175 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 MT-ND2P03891 347 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 LGALS2P05162 132 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 MAPK3P27361 379 aaPredicted RBP12.49□□□□□ -0.41
PTCH1-212ENST00000546744 PSMA6P60900 246 aaKnown RBP12.49□□□□□ -0.41
PTCH1-212ENST00000546744 IRF9Q00978 393 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 EEF1DP3Q658K8 133 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 PYHIN1Q6K0P9 492 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 PAQR7Q86WK9 346 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 TRAPPC5Q8IUR0 188 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 UBE2J2Q8N2K1 259 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 DEDD2Q8WXF8 326 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 CHIAQ9BZP6 476 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 OSBPL2Q9H1P3 480 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 TMEM181Q9P2C4 612 aa12.49□□□□□ -0.41
PTCH1-212ENST00000546744 MYO5AQ9Y4I1 1855 aaKnown RBP12.49□□□□□ -0.41
PTCH1-212ENST00000546744 WNT9AO14904 365 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 PRAF2O60831 178 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 GOT2P00505 430 aaKnown RBP12.48□□□□□ -0.41
PTCH1-212ENST00000546744 GNAO1P09471 354 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 PET100P0DJ07 73 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 KHKP50053 298 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 TARDBPQ13148 414 aaKnown RBP eCLIP12.48□□□□□ -0.41
PTCH1-212ENST00000546744 PROX2Q3B8N5 592 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 SLC22A10Q63ZE4 541 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 NANOGP8Q6NSW7 305 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 MSANTD1Q6ZTZ1 278 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 DENND1CQ8IV53 801 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 BEND7Q8N7W2 519 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-212ENST00000546744 NDC1Q9BTX1 674 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 ZNF395Q9H8N7 513 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-212ENST00000546744 NANOGQ9H9S0 305 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 TIGARQ9NQ88 270 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 TAS2R10Q9NYW0 307 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 FXYD6-FXYD2A0A087WZ82 144 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 GLYATL1P3A0A0U1RQE8 302 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 PROM1O43490 865 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 ENDOD1O94919 500 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 CYP2B6P20813 491 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 SLC5A2P31639 672 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 DGKGP49619 791 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 MAXP61244 160 aa12.48□□□□□ -0.41
PTCH1-212ENST00000546744 USF2Q15853 346 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-212ENST00000546744 TBC1D25Q3MII6 688 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms