RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 PDE12Q6L8Q7 609 aaKnown RBP15.82■□□□□ 0.12
COL4A1-204ENST00000543140 TMEM214Q6NUQ4 689 aaKnown RBP15.82■□□□□ 0.12
COL4A1-204ENST00000543140 TBPL2Q6SJ96 375 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 RIMKLAQ8IXN7 391 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 SYTL1Q8IYJ3 562 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 CYGBQ8WWM9 190 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 NEIL2Q969S2 332 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 NCLNQ969V3 563 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 ITCHQ96J02 903 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 KAT8Q9H7Z6 458 aaKnown RBP15.82■□□□□ 0.12
COL4A1-204ENST00000543140 DYRK4Q9NR20 520 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 TMED5Q9Y3A6 229 aa15.82■□□□□ 0.12
COL4A1-204ENST00000543140 PCM1Q15154 2024 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 TRBV5-3A0A0A0MS03 114 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 ELOVL7A1L3X0 281 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 MAGEB17A8MXT2 336 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 ETHE1O95571 254 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 PABPC4LP0CB38 370 aaKnown RBP15.81■□□□□ 0.12
COL4A1-204ENST00000543140 MYCLP1P12525 358 aaPredicted RBP15.81■□□□□ 0.12
COL4A1-204ENST00000543140 PBX2P40425 430 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 IL12RB1P42701 662 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 CNPY1Q3B7I2 92 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 ANKRD26P1Q6NSI1 321 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 TRMT11Q7Z4G4 463 aaKnown RBP15.81■□□□□ 0.12
COL4A1-204ENST00000543140 SPRED1Q7Z699 444 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 GPR180Q86V85 440 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 METTL25Q8N6Q8 603 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 PACRGLQ8N7B6 248 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 TERB1Q8NA31 727 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 SPDYE1Q8NFV5 336 aaPredicted RBP15.81■□□□□ 0.12
COL4A1-204ENST00000543140 FAM162AQ96A26 154 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 SH3GL1Q99961 368 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 ADI1Q9BV57 179 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 ANKRD60Q9BZ19 345 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 KCNH6Q9H252 994 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 TMEM245Q9H330 911 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 SOX17Q9H6I2 414 aaPredicted RBP15.81■□□□□ 0.12
COL4A1-204ENST00000543140 RMND5AQ9H871 391 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 TMEM98Q9Y2Y6 226 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 NUMA1Q14980 2115 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 KIAA1549LQ6ZVL6 1849 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 CLOCKO15516 846 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 UGDHO60701 494 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 LILRB5O75023 590 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 ERN1O75460 977 aaKnown RBP15.81■□□□□ 0.12
COL4A1-204ENST00000543140 C1orf105O95561 183 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 EPHX1P07099 455 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 POU2F2P09086 479 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 EFNA1P20827 205 aaPredicted RBP15.81■□□□□ 0.12
COL4A1-204ENST00000543140 CHRNB3Q05901 458 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 STARD3Q14849 445 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 NKG7Q16617 165 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 FAM98BQ52LJ0 330 aaKnown RBP15.81■□□□□ 0.12
COL4A1-204ENST00000543140 ZNF547Q8IVP9 402 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 HOMEZQ8IX15 550 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 MFSD2AQ8NA29 543 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 OR56A3Q8NH54 315 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 ZNF480Q8WV37 535 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 SUSD6Q92537 303 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 TESCQ96BS2 214 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 MRPS26Q9BYN8 205 aaKnown RBP15.81■□□□□ 0.12
COL4A1-204ENST00000543140 OLAHQ9NV23 265 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 UTS2RQ9UKP6 389 aa15.81■□□□□ 0.12
COL4A1-204ENST00000543140 MAGED1Q9Y5V3 778 aaPredicted RBP15.81■□□□□ 0.12
COL4A1-204ENST00000543140 A0A096LPI6 279 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 CXCR6O00574 342 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 RFXANKO14593 260 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 SEC24DO94855 1032 aaPredicted RBP15.8■□□□□ 0.12
COL4A1-204ENST00000543140 RAP2AP10114 183 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 ETS2P15036 469 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 ZNF8P17098 575 aaPredicted RBP15.8■□□□□ 0.12
COL4A1-204ENST00000543140 WASP42768 502 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 KIR3DL1P43629 444 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 RPL5P46777 297 aaKnown RBP15.8■□□□□ 0.12
COL4A1-204ENST00000543140 MERTKQ12866 999 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 ZNF658BQ4V348 819 aaPredicted RBP15.8■□□□□ 0.12
COL4A1-204ENST00000543140 TMPRSS11BQ86T26 416 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 TMEM132CQ8N3T6 1108 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 PLA2G15Q8NCC3 412 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 GPR156Q8NFN8 814 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 OR10Q1Q8NGQ4 319 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 CSGALNACT1Q8TDX6 532 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 FAM120BQ96EK7 910 aaKnown RBP15.8■□□□□ 0.12
COL4A1-204ENST00000543140 CCDC115Q96NT0 180 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 CPPED1Q9BRF8 314 aaPredicted RBP15.8■□□□□ 0.12
COL4A1-204ENST00000543140 BDH2Q9BUT1 245 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 REXO4Q9GZR2 422 aaKnown RBP15.8■□□□□ 0.12
COL4A1-204ENST00000543140 GORASP2Q9H8Y8 452 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 SFXN1Q9H9B4 322 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 NTN4Q9HB63 628 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 SH2B3Q9UQQ2 575 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 YBX2Q9Y2T7 364 aaKnown RBP15.8■□□□□ 0.12
COL4A1-204ENST00000543140 PCYT1BQ9Y5K3 369 aaPredicted RBP15.8■□□□□ 0.12
COL4A1-204ENST00000543140 MUC22E2RYF6 1773 aaPredicted RBP15.8■□□□□ 0.12
COL4A1-204ENST00000543140 TRPM6Q9BX84 2022 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 SZT2Q5T011 3432 aa15.8■□□□□ 0.12
COL4A1-204ENST00000543140 PTPN6P29350 595 aa15.79■□□□□ 0.12
COL4A1-204ENST00000543140 ACSM2AQ08AH3 577 aa15.79■□□□□ 0.12
COL4A1-204ENST00000543140 CSTF3Q12996 717 aaKnown RBP15.79■□□□□ 0.12
COL4A1-204ENST00000543140 SLC14A1Q13336 389 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms