RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 C3orf18Q9UK00 162 aa14.74□□□□□ -0.05
CLSTN3-213ENST00000541953 SLC39A10Q9ULF5 831 aa14.74□□□□□ -0.05
CLSTN3-213ENST00000541953 RIMKLBQ9ULI2 386 aa14.74□□□□□ -0.05
CLSTN3-213ENST00000541953 TTC7AQ9ULT0 858 aaPredicted RBP14.74□□□□□ -0.05
CLSTN3-213ENST00000541953 ENTPD4Q9Y227 616 aa14.74□□□□□ -0.05
CLSTN3-213ENST00000541953 KLK4Q9Y5K2 254 aa14.74□□□□□ -0.05
CLSTN3-213ENST00000541953 HEATR5BQ9P2D3 2071 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 IGLV3-12A0A075B6K2 115 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 IGKV1-8A0A0C4DH67 115 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 OR2A25A4D2G3 310 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 PRSS44E7EML9 344 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 PRMT5O14744 637 aaPredicted RBP14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 PSMD3O43242 534 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 KDM1AO60341 852 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 JRKO75564 520 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 PTMAP06454 111 aaKnown RBP14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 APOA4P06727 396 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 PRR35P0CG20 571 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 ADRA1DP25100 572 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 ARNTP27540 789 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 NMBRP28336 390 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 CETN2P41208 172 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 PRAMEP78395 509 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 SYT16Q17RD7 645 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 HKDC1Q2TB90 917 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 PRTGQ2VWP7 1150 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 FBXO42Q6P3S6 717 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 FAM180AQ6UWF9 173 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 TMEM139Q8IV31 216 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 C1orf54Q8WWF1 131 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 SLC22A18Q96BI1 424 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 MIEF2Q96C03 454 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 MAGEB10Q96LZ2 347 aaPredicted RBP14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 RAB6BQ9NRW1 208 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 TREX1Q9NSU2 369 aa14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 INTS7Q9NVH2 962 aaKnown RBP14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 NXT1Q9UKK6 140 aaKnown RBP14.73□□□□□ -0.05
CLSTN3-213ENST00000541953 TARM1B6A8C7 271 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 GOLGA8KD6RF30 607 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 H0YGG7 62 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 GOLGA8TH3BQL2 631 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 MAP2K7O14733 419 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 PCDH17O14917 1159 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 CD3EAPO15446 510 aaKnown RBP14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 HNRNPRO43390 633 aaKnown RBP14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 NIPSNAP2O75323 286 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 RPN2P04844 631 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 PIM1P11309 404 aaPredicted RBP14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 FBLP22087 321 aaKnown RBP14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 MST1P26927 711 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 TNFSF10P50591 281 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 ARF3P61204 181 aaPredicted RBP14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 PMP22Q01453 160 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 SNX1Q13596 522 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 IRAK1BP1Q5VVH5 260 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 SP5Q6BEB4 398 aaPredicted RBP14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 SUSD1Q6UWL2 747 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 CES3Q6UWW8 571 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 ARHGEF39Q8N4T4 335 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 AMER3Q8N944 861 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 HMGCLL1Q8TB92 370 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 ZUFSPQ96AP4 578 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 RAD51AP1Q96B01 352 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 HES6Q96HZ4 224 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 ZNF282Q9UDV7 671 aaPredicted RBP14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 MRPS2Q9Y399 296 aaKnown RBP14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 POLQO75417 2590 aa14.72□□□□□ -0.05
CLSTN3-213ENST00000541953 ERI2A8K979 691 aaKnown RBP14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 IDSB3KWA1 339 aa14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 P2RX6O15547 441 aa14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 SRPX2O60687 465 aaPredicted RBP14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 ZNF189O75820 626 aaPredicted RBP14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 STATHP02808 62 aa14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 APRTP07741 180 aa14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 ITGAMP11215 1152 aa14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 ST13P50502 369 aaKnown RBP14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 ZNF75DP51815 510 aa14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 EIF3BP55884 814 aaKnown RBP14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 SESN2P58004 480 aaPredicted RBP14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 ARG2P78540 354 aa14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 GBX1Q14549 363 aa14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 FAM214AQ32MH5 1076 aa14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 PTRHD1Q6GMV3 140 aaKnown RBP14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 RPUSD3Q6P087 351 aaKnown RBP14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 MCEMP1Q8IX19 187 aa14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 UBL4BQ8N7F7 174 aa14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 BCORP1Q8N888 145 aa14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 SKA2Q8WVK7 121 aaPredicted RBP14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 ITLN2Q8WWU7 325 aaPredicted RBP14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 NR4A3Q92570 626 aa14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 CALR3Q96L12 384 aaKnown RBP14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 BIRC8Q96P09 236 aa14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 LMF1Q96S06 567 aa14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 DPH7Q9BTV6 452 aa14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 RUVBL1Q9Y265 456 aaKnown RBP14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 FAM169AQ9Y6X4 670 aa14.71□□□□□ -0.05
CLSTN3-213ENST00000541953 IGHV1-45A0A0A0MS14 117 aa14.7□□□□□ -0.06
CLSTN3-213ENST00000541953 NSG1A0A0A6YYJ2 146 aa14.7□□□□□ -0.06
CLSTN3-213ENST00000541953 A0A1W2PQ72 361 aa14.7□□□□□ -0.06
CLSTN3-213ENST00000541953 ARHGEF33A8MVX0 844 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms