RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 CTNNB1P35222 781 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 ESRRGP62508 458 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 FOXM1Q08050 763 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 CTU2Q2VPK5 515 aaKnown RBP16.41■□□□□ 0.22
USP28-208ENST00000540438 GPR33Q49SQ1 333 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 PDE12Q6L8Q7 609 aaKnown RBP16.41■□□□□ 0.22
USP28-208ENST00000540438 NECAB2Q7Z6G3 386 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 GPR180Q86V85 440 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 RAVER1Q8IY67 606 aaKnown RBP16.41■□□□□ 0.22
USP28-208ENST00000540438 DPP10Q8N608 796 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 C1orf52Q8N6N3 182 aaKnown RBP16.41■□□□□ 0.22
USP28-208ENST00000540438 MCOLN3Q8TDD5 553 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 ZFAND2BQ8WV99 257 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 OR4K3Q96R72 315 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 OR2AG1Q9H205 316 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 KAT8Q9H7Z6 458 aaKnown RBP16.41■□□□□ 0.22
USP28-208ENST00000540438 TMEM98Q9Y2Y6 226 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 PCYT1BQ9Y5K3 369 aaPredicted RBP16.41■□□□□ 0.22
USP28-208ENST00000540438 GRM6O15303 877 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 POLR2EP19388 210 aaKnown RBP16.4■□□□□ 0.22
USP28-208ENST00000540438 FPGSQ05932 587 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 DAG1Q14118 895 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 FRG2Q64ET8 278 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 CCDC81Q6ZN84 652 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 HMGN2P46Q86SG4 172 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 OSCP1Q8WVF1 389 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 FRG2BQ96QU4 278 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 PREBQ9HCU5 417 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 SPHK2Q9NRA0 654 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 TOR1BO14657 336 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 FPGTO14772 594 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 SGTAO43765 313 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 LILRB3O75022 631 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 MOSPD3O75425 235 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 ALPLP05186 524 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 CTSAP10619 480 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 TIMP2P16035 220 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 PSMA3P25788 255 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 MAP4P27816 1152 aaKnown RBP16.4■□□□□ 0.22
USP28-208ENST00000540438 HNF4AP41235 474 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 DGCR6Q14129 220 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 RUNDC3AQ59EK9 446 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 ZNF852Q6ZMS4 543 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 PROSER1Q86XN7 944 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 MICU2Q8IYU8 434 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 MFSD2AQ8NA29 543 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 POF1BQ8WVV4 589 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 NXPE3Q969Y0 559 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 AP2M1Q96CW1 435 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 OR51B5Q9H339 312 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 A0A087WXM4 84 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 A0A0G2JN53 185 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 J3QRK9 145 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 M0R129 80 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 OR1E2P47887 323 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 CYP4F2P78329 520 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 SLC7A9P82251 487 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 THOC6Q86W42 341 aaKnown RBP16.4■□□□□ 0.22
USP28-208ENST00000540438 SLC44A2Q8IWA5 706 aaPredicted RBP16.4■□□□□ 0.22
USP28-208ENST00000540438 FBXL8Q96CD0 374 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 NTMT1Q9BV86 223 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 SGK2Q9HBY8 427 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 DNAJC11Q9NVH1 559 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 ERVW-1Q9UQF0 538 aa16.4■□□□□ 0.22
USP28-208ENST00000540438 ADH1AP07327 375 aa16.39■□□□□ 0.21
USP28-208ENST00000540438 ELFN1P0C7U0 828 aa16.39■□□□□ 0.21
USP28-208ENST00000540438 ALDH3B2P48448 385 aa16.39■□□□□ 0.21
USP28-208ENST00000540438 IL5RAQ01344 420 aa16.39■□□□□ 0.21
USP28-208ENST00000540438 SNX29P2Q8IUI4 249 aa16.39■□□□□ 0.21
USP28-208ENST00000540438 FAM20CQ8IXL6 584 aa16.39■□□□□ 0.21
USP28-208ENST00000540438 KLK6Q92876 244 aa16.39■□□□□ 0.21
USP28-208ENST00000540438 USP7Q93009 1102 aa16.39■□□□□ 0.21
USP28-208ENST00000540438 RC3H2Q9HBD1 1191 aaKnown RBP16.39■□□□□ 0.21
USP28-208ENST00000540438 C5AR2Q9P296 337 aa16.39■□□□□ 0.21
USP28-208ENST00000540438 HS3ST2Q9Y278 367 aa16.39■□□□□ 0.21
USP28-208ENST00000540438 CFAP54Q96N23 3096 aa16.39■□□□□ 0.21
USP28-208ENST00000540438 MMP20O60882 483 aa16.39■□□□□ 0.21
USP28-208ENST00000540438 CEBPBP17676 345 aa16.39■□□□□ 0.21
USP28-208ENST00000540438 RANBP1P43487 201 aa16.39■□□□□ 0.21
USP28-208ENST00000540438 UGT8Q16880 541 aa16.39■□□□□ 0.21
USP28-208ENST00000540438 COQ5Q5HYK3 327 aa16.39■□□□□ 0.21
USP28-208ENST00000540438 AGTRAPQ6RW13 159 aa16.39■□□□□ 0.21
USP28-208ENST00000540438 TRMT11Q7Z4G4 463 aaKnown RBP16.39■□□□□ 0.21
USP28-208ENST00000540438 PATL1Q86TB9 770 aaKnown RBP16.39■□□□□ 0.21
USP28-208ENST00000540438 ZC3H7AQ8IWR0 971 aaKnown RBP16.39■□□□□ 0.21
USP28-208ENST00000540438 TMEM159Q96B96 161 aa16.39■□□□□ 0.21
USP28-208ENST00000540438 RPL26P61254 145 aaKnown RBP16.38■□□□□ 0.21
USP28-208ENST00000540438 LILRA6Q6PI73 481 aa16.38■□□□□ 0.21
USP28-208ENST00000540438 TRIM46Q7Z4K8 759 aa16.38■□□□□ 0.21
USP28-208ENST00000540438 NEIL2Q969S2 332 aa16.38■□□□□ 0.21
USP28-208ENST00000540438 SLC12A9Q9BXP2 914 aa16.38■□□□□ 0.21
USP28-208ENST00000540438 SPNS1Q9H2V7 528 aa16.38■□□□□ 0.21
USP28-208ENST00000540438 TM7SF3Q9NS93 570 aa16.38■□□□□ 0.21
USP28-208ENST00000540438 SNX6Q9UNH7 406 aa16.38■□□□□ 0.21
USP28-208ENST00000540438 C16orf96A6NNT2 1141 aa16.38■□□□□ 0.21
USP28-208ENST00000540438 CLIC1O00299 241 aa16.38■□□□□ 0.21
USP28-208ENST00000540438 ARNTLO00327 626 aa16.38■□□□□ 0.21
USP28-208ENST00000540438 IL6P05231 212 aa16.38■□□□□ 0.21
USP28-208ENST00000540438 KIR3DL1P43629 444 aa16.38■□□□□ 0.21
USP28-208ENST00000540438 OCA2Q04671 838 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms