RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 NCOR2Q9Y618 2525 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 TLCD2A6NGC4 264 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 SLC9B1P1A6NJY1 282 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 SRRM3A6NNA2 597 aaPredicted RBP12.51□□□□□ -0.41
CCDC42-202ENST00000539522 ISM1B1AKI9 464 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 H3BMH7 237 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 SHOX2O60902 331 aaPredicted RBP12.51□□□□□ -0.41
CCDC42-202ENST00000539522 FGF3P11487 239 aaPredicted RBP12.51□□□□□ -0.41
CCDC42-202ENST00000539522 NPPBP16860 134 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 ITIH1P19827 911 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 MAP4P27816 1152 aaKnown RBP12.51□□□□□ -0.41
CCDC42-202ENST00000539522 GRIA3P42263 894 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 SEPHS1P49903 392 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 SNRPNP63162 240 aaKnown RBP12.51□□□□□ -0.41
CCDC42-202ENST00000539522 GNGT1P63211 74 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 NAE1Q13564 534 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 SLC5A12Q1EHB4 618 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 FAM83EQ2M2I3 478 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 PTCHD3Q3KNS1 767 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 CCDC153Q494R4 210 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 PHF19Q5T6S3 580 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 CACHD1Q5VU97 1274 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 TTC23LQ6PF05 361 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 GPSM1Q86YR5 675 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 STAG3L4Q8TBR4 150 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 MGARPQ8TDB4 240 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 CKAP2Q8WWK9 683 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 SMPDL3AQ92484 453 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 EXT2Q93063 718 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 MOCOSQ96EN8 888 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 LIN37Q96GY3 246 aaPredicted RBP12.51□□□□□ -0.41
CCDC42-202ENST00000539522 DEPDC7Q96QD5 511 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 MIPEPQ99797 713 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 PAIP2Q9BPZ3 127 aaKnown RBP12.51□□□□□ -0.41
CCDC42-202ENST00000539522 ACAT2Q9BWD1 397 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 RAB11FIP5Q9BXF6 653 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 SPNS1Q9H2V7 528 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 CCDC134Q9H6E4 229 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 CUEDC1Q9NWM3 386 aaPredicted RBP12.51□□□□□ -0.41
CCDC42-202ENST00000539522 TAC3Q9UHF0 121 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 RNF112Q9ULX5 631 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 KLK4Q9Y5K2 254 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 LAMA5O15230 3695 aa12.51□□□□□ -0.41
CCDC42-202ENST00000539522 MDC1Q14676 2089 aaKnown RBP12.5□□□□□ -0.41
CCDC42-202ENST00000539522 G3V2L1 256 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 BIRC5O15392 142 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 TOX3O15405 576 aaPredicted RBP12.5□□□□□ -0.41
CCDC42-202ENST00000539522 CTSVO60911 334 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 PROCP04070 461 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 CAPNS1P04632 268 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 DHRS4L1P0CG22 281 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 FOLR1P15328 257 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 NELFEP18615 380 aaKnown RBP12.5□□□□□ -0.41
CCDC42-202ENST00000539522 MAGP20916 626 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 ETV4P43268 484 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 TRA2AQ13595 282 aaKnown RBP eCLIP12.5□□□□□ -0.41
CCDC42-202ENST00000539522 TSNAXIP1Q2TAA8 658 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 TTC19Q6DKK2 380 aaPredicted RBP12.5□□□□□ -0.41
CCDC42-202ENST00000539522 ZNF425Q6IV72 752 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 KLHL35Q6PF15 583 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 SYTL1Q8IYJ3 562 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 D2HGDHQ8N465 521 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 UBTD2Q8WUN7 234 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 ZDHHC12Q96GR4 267 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 MAGEB18Q96M61 343 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 TMEM74Q96NL1 305 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 FCRL4Q96PJ5 515 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 FAM111AQ96PZ2 611 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 CD180Q99467 661 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 DPYSL5Q9BPU6 564 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 APMAPQ9HDC9 416 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 ACSS2Q9NR19 701 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 C1GALT1Q9NS00 363 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 NUDT4Q9NZJ9 180 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 CPSF2Q9P2I0 782 aaKnown RBP12.5□□□□□ -0.41
CCDC42-202ENST00000539522 SLC17A7Q9P2U7 560 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 SATB2Q9UPW6 733 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 BTRCQ9Y297 605 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 CEP295Q9C0D2 2601 aa12.5□□□□□ -0.41
CCDC42-202ENST00000539522 A0A0J9YY10 115 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 OR2A25A4D2G3 310 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 GMNCA6NCL1 334 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 MATN2O00339 956 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 DLX3O60479 287 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 SIX3O95343 332 aaPredicted RBP12.49□□□□□ -0.41
CCDC42-202ENST00000539522 TIAF1O95411 115 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 ANXA5P08758 320 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 HIST1H2AGP0C0S8 130 aaPredicted RBP12.49□□□□□ -0.41
CCDC42-202ENST00000539522 EBLN1P0CF75 366 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 JUPP14923 745 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 HIST1H2ADP20671 130 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 LSP1P33241 339 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 HSD17B2P37059 387 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 HSPA7P48741 367 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 GABPB1Q06547 395 aaPredicted RBP12.49□□□□□ -0.41
CCDC42-202ENST00000539522 PRDX1Q06830 199 aaKnown RBP12.49□□□□□ -0.41
CCDC42-202ENST00000539522 COL9A2Q14055 689 aaPredicted RBP12.49□□□□□ -0.41
CCDC42-202ENST00000539522 SETDB1Q15047 1291 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 CDKL4Q5MAI5 379 aa12.49□□□□□ -0.41
CCDC42-202ENST00000539522 ICE2Q659A1 982 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms