RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 HELZ2Q9BYK8 2649 aaKnown RBP14.17□□□□□ -0.14
USP28-204ENST00000537642 PCSK5Q92824 1860 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 IGKV1-8A0A0C4DH67 115 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 ZNF839A8K0R7 811 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 E7ENX8 843 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 KLF7O75840 302 aaPredicted RBP14.17□□□□□ -0.14
USP28-204ENST00000537642 ATXN8OSP0DMR3 200 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 ITGAXP20702 1163 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 IMPA1P29218 277 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 PGGT1BP53609 377 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 VSX2P58304 361 aaPredicted RBP14.17□□□□□ -0.14
USP28-204ENST00000537642 TAP2Q03519 686 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 SLC9A5Q14940 896 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 TCTE1Q5JU00 501 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 HECTD2Q5U5R9 776 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 MLIPQ5VWP3 458 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 CPZQ66K79 652 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 FRMPD2BQ6IN97 320 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 MAATS1Q7Z4T9 603 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 LRRC56Q8IYG6 542 aaPredicted RBP14.17□□□□□ -0.14
USP28-204ENST00000537642 BBOF1Q8ND07 529 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 DHRS4Q9BTZ2 278 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 TRIM55Q9BYV6 548 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 MRPS30Q9NP92 439 aaKnown RBP14.17□□□□□ -0.14
USP28-204ENST00000537642 ZNF71Q9NQZ8 489 aaPredicted RBP14.17□□□□□ -0.14
USP28-204ENST00000537642 SLC22A11Q9NSA0 550 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 MOCS1Q9NZB8 636 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 IFT80Q9P2H3 777 aaPredicted RBP14.17□□□□□ -0.14
USP28-204ENST00000537642 TAC3Q9UHF0 121 aa14.17□□□□□ -0.14
USP28-204ENST00000537642 LOC105369274A0A096LPK9 316 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 LOC102723532A0A0G2JNH3 316 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 A0A0J9YVX5 310 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 FITM1A5D6W6 292 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 NDC80O14777 642 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 SLC28A2O43868 658 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 SRPX2O60687 465 aaPredicted RBP14.16□□□□□ -0.14
USP28-204ENST00000537642 CNOT3O75175 753 aaKnown RBP14.16□□□□□ -0.14
USP28-204ENST00000537642 RFPL1O75677 317 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 DNAJB5O75953 348 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 TSPAN12O95859 305 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 ALAS2P22557 587 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 RGS4P49798 205 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 ARSFP54793 590 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 PRDX1Q06830 199 aaKnown RBP14.16□□□□□ -0.14
USP28-204ENST00000537642 MGAT5Q09328 741 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 CHAF1BQ13112 559 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 GRM7Q14831 915 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 NAA25Q14CX7 972 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 NKAIN1Q4KMZ8 207 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 WASHC2DQ5SRD0 308 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 ICE2Q659A1 982 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 DUPD1Q68J44 220 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 LRRC8EQ6NSJ5 796 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 MRPL14Q6P1L8 145 aaKnown RBP14.16□□□□□ -0.14
USP28-204ENST00000537642 FBXO42Q6P3S6 717 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 TTLL10Q6ZVT0 673 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 PTRH1Q86Y79 214 aaKnown RBP14.16□□□□□ -0.14
USP28-204ENST00000537642 TMEM151BQ8IW70 566 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 OR4N4Q8N0Y3 316 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 GPATCH11Q8N954 259 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 LINGO1Q96FE5 620 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 OLFM1Q99784 485 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 C17orf62Q9BQA9 187 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 PLCD4Q9BRC7 762 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 SYNPO2LQ9H987 977 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 CUTCQ9NTM9 273 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 GRHL1Q9NZI5 618 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 WHRNQ9P202 907 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 ANKMY1Q9P2S6 941 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 GPN3Q9UHW5 284 aaPredicted RBP14.16□□□□□ -0.14
USP28-204ENST00000537642 TLK1Q9UKI8 766 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 CORO1CQ9ULV4 474 aaPredicted RBP14.16□□□□□ -0.14
USP28-204ENST00000537642 PDE10AQ9Y233 779 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 PADI2Q9Y2J8 665 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 HEMK1Q9Y5R4 338 aaPredicted RBP14.16□□□□□ -0.14
USP28-204ENST00000537642 PSAT1Q9Y617 370 aa14.16□□□□□ -0.14
USP28-204ENST00000537642 TNRC6AQ8NDV7 1962 aaKnown RBP14.16□□□□□ -0.14
USP28-204ENST00000537642 GCN1Q92616 2671 aaKnown RBP14.16□□□□□ -0.14
USP28-204ENST00000537642 A0A1B0GX78 115 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 ARGFXA6NJG6 315 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 MKRN2OSH3BPM6 223 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 K7EM74 188 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 DSCR3O14972 297 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 SUV39H1O43463 412 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 MED26O95402 600 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 ONECUT2O95948 504 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 C8GP07360 202 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 FDXRP22570 491 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 FOXL2P58012 376 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 CALCOCO2Q13137 446 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 LACTB2Q53H82 288 aaPredicted RBP14.15□□□□□ -0.14
USP28-204ENST00000537642 YOD1Q5VVQ6 348 aaPredicted RBP14.15□□□□□ -0.14
USP28-204ENST00000537642 ZNF425Q6IV72 752 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 FAM45BPQ6NSW5 357 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 MBOAT1Q6ZNC8 495 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 PRICKLE2Q7Z3G6 844 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 ZNF572Q7Z3I7 529 aaPredicted RBP14.15□□□□□ -0.14
USP28-204ENST00000537642 PAQR7Q86WK9 346 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 ZBED8Q8IZ13 594 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 MYO1HQ8N1T3 1032 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms