RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 CCNYL3P0C7X3 344 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 CYP2A7P20853 494 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 SAT1P21673 171 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 CMPK1P30085 196 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 SPRP35270 261 aaPredicted RBP12.45□□□□□ -0.42
VPS28-216ENST00000533806 AP1S2P56377 157 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 ABATP80404 500 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 EFTUD2Q15029 972 aaKnown RBP eCLIP12.45□□□□□ -0.422e-7■■■■□ 23.3
VPS28-216ENST00000533806 ZC3H12BQ5HYM0 836 aaKnown RBP12.45□□□□□ -0.42
VPS28-216ENST00000533806 ICE2Q659A1 982 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 RHBDD2Q6NTF9 364 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 FAM199XQ6PEV8 388 aaPredicted RBP12.45□□□□□ -0.42
VPS28-216ENST00000533806 AGTRAPQ6RW13 159 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 CEP128Q6ZU80 1094 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 RNF44Q7L0R7 432 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 PAQR7Q86WK9 346 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 CTAGE3PQ8IX95 158 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 SYTL1Q8IYJ3 562 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 DSELQ8IZU8 1212 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 OR56A3Q8NH54 315 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 CT55Q8WUE5 264 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 TTC9Q92623 222 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 PLCD4Q9BRC7 762 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 ACAT2Q9BWD1 397 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 SGPP1Q9BX95 441 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 FAM117AQ9C073 453 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 CDC42EP4Q9H3Q1 356 aaKnown RBP12.45□□□□□ -0.42
VPS28-216ENST00000533806 ACSS3Q9H6R3 686 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 ACTR5Q9H9F9 607 aaPredicted RBP12.45□□□□□ -0.42
VPS28-216ENST00000533806 GPN2Q9H9Y4 310 aaPredicted RBP12.45□□□□□ -0.42
VPS28-216ENST00000533806 ANKMY1Q9P2S6 941 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 TAC3Q9UHF0 121 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 CROTQ9UKG9 612 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 RALYQ9UKM9 306 aaKnown RBP12.45□□□□□ -0.42
VPS28-216ENST00000533806 AP1M2Q9Y6Q5 423 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 C21orf140B9A014 251 aa12.44□□□□□ -0.42
VPS28-216ENST00000533806 ZSCAN9O15535 394 aaPredicted RBP12.44□□□□□ -0.42
VPS28-216ENST00000533806 ZNF500O60304 480 aaPredicted RBP12.44□□□□□ -0.42
VPS28-216ENST00000533806 SRPX2O60687 465 aaPredicted RBP12.44□□□□□ -0.42
VPS28-216ENST00000533806 RECKO95980 971 aa12.44□□□□□ -0.42
VPS28-216ENST00000533806 TCN2P20062 427 aa12.44□□□□□ -0.42
VPS28-216ENST00000533806 RPA3P35244 121 aaPredicted RBP12.44□□□□□ -0.42
VPS28-216ENST00000533806 TBPL1P62380 186 aa12.44□□□□□ -0.42
VPS28-216ENST00000533806 USP10Q14694 798 aaKnown RBP12.44□□□□□ -0.42
VPS28-216ENST00000533806 FRMPD2BQ6IN97 320 aa12.44□□□□□ -0.42
VPS28-216ENST00000533806 TLDC1Q6P9B6 456 aa12.44□□□□□ -0.42
VPS28-216ENST00000533806 IFT20Q8IY31 132 aa12.44□□□□□ -0.42
VPS28-216ENST00000533806 GPR135Q8IZ08 494 aa12.44□□□□□ -0.42
VPS28-216ENST00000533806 KIAA1143Q96AT1 154 aaPredicted RBP12.44□□□□□ -0.42
VPS28-216ENST00000533806 FBXL8Q96CD0 374 aa12.44□□□□□ -0.42
VPS28-216ENST00000533806 CYTH2Q99418 400 aa12.44□□□□□ -0.42
VPS28-216ENST00000533806 EFHD1Q9BUP0 239 aa12.44□□□□□ -0.42
VPS28-216ENST00000533806 TXLNGYQ9BZA5 131 aa12.44□□□□□ -0.42
VPS28-216ENST00000533806 DERL2Q9GZP9 239 aa12.44□□□□□ -0.42
VPS28-216ENST00000533806 GPAMQ9HCL2 828 aa12.44□□□□□ -0.42
VPS28-216ENST00000533806 MRPS30Q9NP92 439 aaKnown RBP12.44□□□□□ -0.42
VPS28-216ENST00000533806 TXNDC16Q9P2K2 825 aa12.44□□□□□ -0.42
VPS28-216ENST00000533806 NFU1Q9UMS0 254 aa12.44□□□□□ -0.42
VPS28-216ENST00000533806 PIEZO2Q9H5I5 2752 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 LOC105369274A0A096LPK9 316 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 LOC102723532A0A0G2JNH3 316 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 PHGDHO43175 533 aaKnown RBP12.43□□□□□ -0.42
VPS28-216ENST00000533806 ONECUT2O95948 504 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 SLC35E2BP0CK96 405 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 NPPBP16860 134 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 STMN1P16949 149 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 DLSTP36957 453 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 RAB10P61026 200 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 CYP4F2P78329 520 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 CDKL1Q00532 357 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 RHDQ02161 417 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 NAE1Q13564 534 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 DNASE1L3Q13609 305 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 NAA25Q14CX7 972 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 OR4N4Q8N0Y3 316 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 ARHGEF39Q8N4T4 335 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 ZNF655Q8N720 491 aaPredicted RBP12.43□□□□□ -0.42
VPS28-216ENST00000533806 EIF1ADQ8N9N8 165 aaKnown RBP12.43□□□□□ -0.42
VPS28-216ENST00000533806 TSPAN17Q96FV3 270 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 BBC3Q96PG8 261 aaPredicted RBP12.43□□□□□ -0.42
VPS28-216ENST00000533806 GBP5Q96PP8 586 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 OR2A5Q96R48 311 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 OR4K3Q96R72 315 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 RUFY1Q96T51 708 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 DPH2Q9BQC3 489 aaPredicted RBP12.43□□□□□ -0.42
VPS28-216ENST00000533806 GPR87Q9BY21 358 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 ATG10Q9H0Y0 220 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 CHST8Q9H2A9 424 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 CCDC177Q9NQR7 707 aaPredicted RBP12.43□□□□□ -0.42
VPS28-216ENST00000533806 CUEDC1Q9NWM3 386 aaPredicted RBP12.43□□□□□ -0.42
VPS28-216ENST00000533806 ARL15Q9NXU5 204 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 KCND3Q9UK17 655 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 SNX7Q9UNH6 387 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 SH2B3Q9UQQ2 575 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 OARD1Q9Y530 152 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 MRPS18BQ9Y676 258 aaKnown RBP12.43□□□□□ -0.42
VPS28-216ENST00000533806 SNRNP200O75643 2136 aaKnown RBP12.43□□□□□ -0.42
VPS28-216ENST00000533806 SPTBP11277 2137 aa12.43□□□□□ -0.42
VPS28-216ENST00000533806 KCNE1BA0A087WTH5 132 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 ZNF891A8MT65 544 aaPredicted RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms