RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 KIAA1191Q96A73 305 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 PPWD1Q96BP3 646 aaKnown RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 COA7Q96BR5 231 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 C12orf43Q96C57 262 aaKnown RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 REPS1Q96D71 796 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 PTCD3Q96EY7 689 aaKnown RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 C14orf79Q96F83 325 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 ZNF285Q96NJ3 590 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 FMO2Q99518 471 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 PLIN2Q99541 437 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 RAD9AQ99638 391 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 ZNF577Q9BSK1 485 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 CHID1Q9BWS9 393 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 STRA6Q9BX79 667 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 TSSK1BQ9BXA7 367 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 FRMD8P1Q9BZ68 369 aaPredicted RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 ENKD1Q9H0I2 346 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 RPF2Q9H7B2 306 aaKnown RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 JMJD4Q9H9V9 463 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 EFCAB1Q9HAE3 211 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 MAGEF1Q9HAY2 307 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 MCCC2Q9HCC0 563 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 AKIP1Q9NQ31 210 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 DNAJC11Q9NVH1 559 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 THUMPD1Q9NXG2 353 aaKnown RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 CTSFQ9UBX1 484 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 MKLN1Q9UL63 735 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 PCDHA6Q9UN73 950 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 ABCG2Q9UNQ0 655 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 CHKBQ9Y259 395 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 TP53TG5Q9Y2B4 290 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 MYRFQ9Y2G1 1151 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 MTO1Q9Y2Z2 717 aaKnown RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 PCDHGA1Q9Y5H4 931 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 SNX13Q9Y5W8 968 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 ACTL7AQ9Y615 435 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 COPG1Q9Y678 874 aaKnown RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 HSPE1-MOB4S4R3N1 261 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 PFASO15067 1338 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 EMSYQ7Z589 1322 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 RPTORQ8N122 1335 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 PRAG1Q86YV5 1406 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 QRICH2Q9H0J4 1663 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 ANKRD26Q9UPS8 1709 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 XKRY2A2RUG3 117 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 FAM149AA5PLN7 773 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 MARCH11A6NNE9 402 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 BTNL10A8MVZ5 291 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 H3BNH8 94 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 KCNK1O00180 336 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 KPNA3O00505 521 aaPredicted RBP5.36□□□□□ -1.55
CD44-236ENST00000533222 MEIS2O14770 477 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 PGRMC2O15173 223 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 INSIG1O15503 277 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 ADAM12O43184 909 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 HTRA2O43464 458 aaPredicted RBP5.36□□□□□ -1.55
CD44-236ENST00000533222 PRKYO43930 277 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 HUS1O60921 280 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 ZNF780AO75290 641 aaPredicted RBP5.36□□□□□ -1.55
CD44-236ENST00000533222 NDUFS6O75380 124 aaKnown RBP5.36□□□□□ -1.55
CD44-236ENST00000533222 STX11O75558 287 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 SPAG6O75602 509 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 PIAS2O75928 621 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 PEX11BO96011 259 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 CRHP06850 196 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 PROS1P07225 676 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 FGF4P08620 206 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 SUPT20HL2P0C7V6 817 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 RNH1P13489 461 aaKnown RBP5.36□□□□□ -1.55
CD44-236ENST00000533222 PKMP14618 531 aaKnown RBP5.36□□□□□ -1.55
CD44-236ENST00000533222 CPN2P22792 545 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 PROZP22891 400 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 ECHS1P30084 290 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 BTDP43251 543 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 SERPINB10P48595 397 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 PIK3CGP48736 1102 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 FHITP49789 147 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 TOB1P50616 345 aaPredicted RBP5.36□□□□□ -1.55
CD44-236ENST00000533222 PPP5CP53041 499 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 PKNOX1P55347 436 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 RAB25P57735 213 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 STARD6P59095 220 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 EIF3EP60228 445 aaKnown RBP5.36□□□□□ -1.55
CD44-236ENST00000533222 RPP30P78346 268 aaKnown RBP5.36□□□□□ -1.55
CD44-236ENST00000533222 IL9RQ01113 521 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 RHDQ02161 417 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 DUSP2Q05923 314 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 BTKQ06187 659 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 MGAT2Q10469 447 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 BFSP2Q13515 415 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 IL10RAQ13651 578 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 TOB2Q14106 344 aaPredicted RBP5.36□□□□□ -1.55
CD44-236ENST00000533222 ICAM4Q14773 271 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 TRAM2Q15035 370 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 MLC1Q15049 377 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 NECTIN1Q15223 517 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 CERKLQ49MI3 558 aaPredicted RBP5.36□□□□□ -1.55
CD44-236ENST00000533222 XKR4Q5GH76 650 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 TOR1AIP1Q5JTV8 583 aa5.36□□□□□ -1.55
CD44-236ENST00000533222 KIAA1755Q5JYT7 1200 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms