RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 GPN2Q9H9Y4 310 aaPredicted RBP14.45□□□□□ -0.1
CPSF1-208ENST00000532560 GPAMQ9HCL2 828 aa14.45□□□□□ -0.1
CPSF1-208ENST00000532560 SLC6A20Q9NP91 592 aa14.45□□□□□ -0.1
CPSF1-208ENST00000532560 MRPS30Q9NP92 439 aaKnown RBP14.45□□□□□ -0.1
CPSF1-208ENST00000532560 LHX9Q9NQ69 397 aa14.45□□□□□ -0.1
CPSF1-208ENST00000532560 CCDC177Q9NQR7 707 aaPredicted RBP14.45□□□□□ -0.1
CPSF1-208ENST00000532560 ENAMQ9NRM1 1142 aa14.45□□□□□ -0.1
CPSF1-208ENST00000532560 TAC3Q9UHF0 121 aa14.45□□□□□ -0.1
CPSF1-208ENST00000532560 PCDHGA4Q9Y5G9 962 aa14.45□□□□□ -0.1
CPSF1-208ENST00000532560 ITPR1Q14643 2758 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 OR2A25A4D2G3 310 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 PABPN1LA6NDY0 278 aaKnown RBP14.44□□□□□ -0.1
CPSF1-208ENST00000532560 TERTO14746 1132 aaKnown RBP14.44□□□□□ -0.1
CPSF1-208ENST00000532560 ZSCAN9O15535 394 aaPredicted RBP14.44□□□□□ -0.1
CPSF1-208ENST00000532560 OR2B3O76000 313 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 HBQ1P09105 142 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 HIST1H2AGP0C0S8 130 aaPredicted RBP14.44□□□□□ -0.1
CPSF1-208ENST00000532560 CCNYL3P0C7X3 344 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 WT1P19544 449 aaPredicted RBP14.44□□□□□ -0.1
CPSF1-208ENST00000532560 HIST1H2ADP20671 130 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 RORAP35398 523 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 TBPL1P62380 186 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 ABATP80404 500 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 PRDX1Q06830 199 aaKnown RBP14.44□□□□□ -0.1
CPSF1-208ENST00000532560 TSTA3Q13630 321 aaPredicted RBP14.44□□□□□ -0.1
CPSF1-208ENST00000532560 USP10Q14694 798 aaKnown RBP14.44□□□□□ -0.1
CPSF1-208ENST00000532560 PPP1R3AQ16821 1122 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 ZC3H12BQ5HYM0 836 aaKnown RBP14.44□□□□□ -0.1
CPSF1-208ENST00000532560 ARHGAP40Q5TG30 622 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 PRAMEF17Q5VTA0 474 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 ICE2Q659A1 982 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 TLDC1Q6P9B6 456 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 ZNF517Q6ZMY9 492 aaPredicted RBP14.44□□□□□ -0.1
CPSF1-208ENST00000532560 MBOAT1Q6ZNC8 495 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 RNF44Q7L0R7 432 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 ZSCAN1Q8NBB4 408 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 SLC38A9Q8NBW4 561 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 ANKRD49Q8WVL7 239 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 SLC45A3Q96JT2 553 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 HIST1H2AHQ96KK5 128 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 CYTH2Q99418 400 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 HIST1H2AJQ99878 128 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 H2AFJQ9BTM1 129 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 DERL2Q9GZP9 239 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 CAB39LQ9H9S4 337 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 EURLQ9NYK6 297 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 CROTQ9UKG9 612 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 IKZF3Q9UKT9 509 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 PADI1Q9ULC6 663 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 AP1M2Q9Y6Q5 423 aa14.44□□□□□ -0.1
CPSF1-208ENST00000532560 IGKV1-8A0A0C4DH67 115 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 NPEPPSL1A6NEC2 478 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 C21orf140B9A014 251 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 ZNF749O43361 778 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 CTSVO60911 334 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 FAM155BO75949 473 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 ACSL3O95573 720 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 RHOXF2BP0C7M4 288 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 SPTBP11277 2137 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 STMN1P16949 149 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 CCND1P24385 295 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 RAB10P61026 200 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 UBAP2Q5T6F2 1119 aaKnown RBP14.43□□□□□ -0.1
CPSF1-208ENST00000532560 PRAMEF13Q5VWM6 474 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 AGTRAPQ6RW13 159 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 ADAMTSL2Q86TH1 951 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 MCATQ8IVS2 390 aaKnown RBP14.43□□□□□ -0.1
CPSF1-208ENST00000532560 DSELQ8IZU8 1212 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 ZNF285Q96NJ3 590 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 RHOXF2Q9BQY4 288 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 PLCD4Q9BRC7 762 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 DPH7Q9BTV6 452 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 SGPP1Q9BX95 441 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 TRIM54Q9BYV2 358 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 PCBD2Q9H0N5 130 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 MED4Q9NPJ6 270 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 ARL15Q9NXU5 204 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 NFU1Q9UMS0 254 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 SRPK3Q9UPE1 567 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 PCDHGA6Q9Y5G7 932 aa14.43□□□□□ -0.1
CPSF1-208ENST00000532560 ZNF891A8MT65 544 aaPredicted RBP14.42□□□□□ -0.1
CPSF1-208ENST00000532560 CDC7O00311 574 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 PHGDHO43175 533 aaKnown RBP14.42□□□□□ -0.1
CPSF1-208ENST00000532560 NRP2O60462 931 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 KLK3P07288 261 aaPredicted RBP14.42□□□□□ -0.1
CPSF1-208ENST00000532560 CTSBP07858 339 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 DLSTP36957 453 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 GCGRP47871 477 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 YBX1P67809 324 aaKnown RBP14.42□□□□□ -0.1
CPSF1-208ENST00000532560 CDKL1Q00532 357 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 DNASE1L3Q13609 305 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 SLMAPQ14BN4 828 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 TCTE1Q5JU00 501 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 THEMIS2Q5TEJ8 643 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 ZNF385CQ66K41 422 aaPredicted RBP14.42□□□□□ -0.1
CPSF1-208ENST00000532560 ZNF425Q6IV72 752 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 RHBDD2Q6NTF9 364 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 ZNF771Q7L3S4 317 aaPredicted RBP14.42□□□□□ -0.1
CPSF1-208ENST00000532560 PAQR7Q86WK9 346 aa14.42□□□□□ -0.1
CPSF1-208ENST00000532560 PROKR1Q8TCW9 393 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms