RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 HSD3B2P26439 372 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 MAPK1P28482 360 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 MAT2AP31153 395 aaKnown RBP20.02■□□□□ 0.8
VPS28-209ENST00000528142 PPP2CBP62714 309 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 PPP2CAP67775 309 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 FAM174BQ3ZCQ3 159 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 TMEM92Q6UXU6 159 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 SPATA24Q86W54 205 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 HID1Q8IV36 788 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 KBTBD2Q8IY47 623 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 OR7G3Q8NG95 312 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 SLC13A3Q8WWT9 602 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 DNAJC9Q8WXX5 260 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 ZNF570Q96NI8 536 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 MTERF1Q99551 399 aaKnown RBP20.02■□□□□ 0.8
VPS28-209ENST00000528142 RMI1Q9H9A7 625 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 BRF2Q9HAW0 419 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 VPS29Q9UBQ0 182 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 MYO10Q9HD67 2058 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 F5P12259 2224 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 CASQ2O14958 399 aaPredicted RBP20.02■□□□□ 0.79
VPS28-209ENST00000528142 ASGR2P07307 311 aa20.02■□□□□ 0.79
VPS28-209ENST00000528142 ERGP11308 486 aa20.02■□□□□ 0.79
VPS28-209ENST00000528142 RHDQ02161 417 aa20.02■□□□□ 0.79
VPS28-209ENST00000528142 PWP1Q13610 501 aa20.02■□□□□ 0.79
VPS28-209ENST00000528142 TAF11Q15544 211 aa20.02■□□□□ 0.79
VPS28-209ENST00000528142 SPANXN4Q5MJ08 99 aa20.02■□□□□ 0.79
VPS28-209ENST00000528142 CATSPEREQ5SY80 951 aa20.02■□□□□ 0.79
VPS28-209ENST00000528142 ATG9BQ674R7 924 aa20.02■□□□□ 0.79
VPS28-209ENST00000528142 CAPRIN2Q6IMN6 1127 aaKnown RBP20.02■□□□□ 0.79
VPS28-209ENST00000528142 TMPRSS11BQ86T26 416 aa20.02■□□□□ 0.79
VPS28-209ENST00000528142 OR5K2Q8NHB8 316 aa20.02■□□□□ 0.79
VPS28-209ENST00000528142 CLHC1Q8NHS4 586 aa20.02■□□□□ 0.79
VPS28-209ENST00000528142 SETD7Q8WTS6 366 aaKnown RBP20.02■□□□□ 0.79
VPS28-209ENST00000528142 C11orf24Q96F05 449 aaPredicted RBP20.02■□□□□ 0.79
VPS28-209ENST00000528142 APOLD1Q96LR9 279 aa20.02■□□□□ 0.79
VPS28-209ENST00000528142 IL17FQ96PD4 163 aa20.02■□□□□ 0.79
VPS28-209ENST00000528142 APOOQ9BUR5 198 aa20.02■□□□□ 0.79
VPS28-209ENST00000528142 EHD1Q9H4M9 534 aa20.02■□□□□ 0.79
VPS28-209ENST00000528142 CCDC177Q9NQR7 707 aaPredicted RBP20.02■□□□□ 0.79
VPS28-209ENST00000528142 ACSL5Q9ULC5 683 aa20.02■□□□□ 0.79
VPS28-209ENST00000528142 NCKAP1Q9Y2A7 1128 aa20.02■□□□□ 0.79
VPS28-209ENST00000528142 DYRK1BQ9Y463 629 aa20.02■□□□□ 0.79
VPS28-209ENST00000528142 NEUROG3Q9Y4Z2 214 aa20.02■□□□□ 0.79
VPS28-209ENST00000528142 C15orf38-AP3S2A0A0A6YYH1 394 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 PRSS51A0A1B0GVH4 220 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 TCRBV3S1A0A5B6 114 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 PGRP06401 933 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 C1GALT1C1LP0DN25 315 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 GLULP15104 373 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 EEFSECP57772 596 aaKnown RBP20.01■□□□□ 0.79
VPS28-209ENST00000528142 MUM1Q2TAK8 710 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 CMPK2Q5EBM0 449 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 ADNP2Q6IQ32 1131 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 NOXRED1Q6NXP6 359 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 TLDC1Q6P9B6 456 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 CHST15Q7LFX5 561 aaPredicted RBP20.01■□□□□ 0.79
VPS28-209ENST00000528142 ARPINQ7Z6K5 226 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 DHFR2Q86XF0 187 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 FAM9CQ8IZT9 166 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 PQLC1Q8N2U9 271 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 RPLP0P6Q8NHW5 317 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 GTF2H4Q92759 462 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 HLA-CQ95604 372 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 ZUFSPQ96AP4 578 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 DUS3LQ96G46 650 aaKnown RBP20.01■□□□□ 0.79
VPS28-209ENST00000528142 TIMM29Q9BSF4 260 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 PHF7Q9BWX1 381 aaPredicted RBP20.01■□□□□ 0.79
VPS28-209ENST00000528142 BTBD1Q9H0C5 482 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 FZD3Q9NPG1 666 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 C6orf203Q9P0P8 240 aaPredicted RBP20.01■□□□□ 0.79
VPS28-209ENST00000528142 PLAGL1Q9UM63 463 aa20.01■□□□□ 0.79
VPS28-209ENST00000528142 ATG2BQ96BY7 2078 aa20■□□□□ 0.79
VPS28-209ENST00000528142 PRR19A6NJB7 356 aa20■□□□□ 0.79
VPS28-209ENST00000528142 MAGEB17A8MXT2 336 aa20■□□□□ 0.79
VPS28-209ENST00000528142 SLC31A1O15431 190 aa20■□□□□ 0.79
VPS28-209ENST00000528142 PI15O43692 258 aa20■□□□□ 0.79
VPS28-209ENST00000528142 ACP5P13686 325 aa20■□□□□ 0.79
VPS28-209ENST00000528142 GSK3BP49841 420 aa20■□□□□ 0.79
VPS28-209ENST00000528142 BNIP2Q12982 314 aa20■□□□□ 0.79
VPS28-209ENST00000528142 CCINQ13939 588 aa20■□□□□ 0.79
VPS28-209ENST00000528142 SMAD2Q15796 467 aaKnown RBP20■□□□□ 0.79
VPS28-209ENST00000528142 FBXO43Q4G163 708 aa20■□□□□ 0.79
VPS28-209ENST00000528142 EOGTQ5NDL2 527 aa20■□□□□ 0.79
VPS28-209ENST00000528142 MED27Q6P2C8 311 aa20■□□□□ 0.79
VPS28-209ENST00000528142 FAM124AQ86V42 546 aa20■□□□□ 0.79
VPS28-209ENST00000528142 RIMKLAQ8IXN7 391 aa20■□□□□ 0.79
VPS28-209ENST00000528142 PLCD3Q8N3E9 789 aa20■□□□□ 0.79
VPS28-209ENST00000528142 HUS1BQ8NHY5 278 aa20■□□□□ 0.79
VPS28-209ENST00000528142 SLC5A11Q8WWX8 675 aa20■□□□□ 0.79
VPS28-209ENST00000528142 METTL2AQ96IZ6 378 aaKnown RBP20■□□□□ 0.79
VPS28-209ENST00000528142 HHIPQ96QV1 700 aa20■□□□□ 0.79
VPS28-209ENST00000528142 CGREF1Q99674 301 aa20■□□□□ 0.79
VPS28-209ENST00000528142 MENTQ9BUN1 341 aa20■□□□□ 0.79
VPS28-209ENST00000528142 EFCAB11Q9BUY7 163 aa20■□□□□ 0.79
VPS28-209ENST00000528142 CD93Q9NPY3 652 aa20■□□□□ 0.79
VPS28-209ENST00000528142 WDR37Q9Y2I8 494 aa20■□□□□ 0.79
VPS28-209ENST00000528142 KANSL1LA0AUZ9 987 aa19.99■□□□□ 0.79
VPS28-209ENST00000528142 NARSO43776 548 aaKnown RBP19.99■□□□□ 0.79
VPS28-209ENST00000528142 ETHE1O95571 254 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms