RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 CRB3Q9BUF7 120 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 CARD6Q9BX69 1037 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 ETNK1Q9HBU6 452 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 OLAHQ9NV23 265 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 MRPS2Q9Y399 296 aaKnown RBP13.6□□□□□ -0.23
CPSF1-201ENST00000526271 GTF3C1Q12789 2109 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 SCN3AQ9NY46 2000 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 OR2A25A4D2G3 310 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 QSOX1O00391 747 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 KLHL41O60662 606 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 STK10O94804 968 aaKnown RBP13.59□□□□□ -0.23
CPSF1-201ENST00000526271 TJP3O95049 919 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 ARNTP27540 789 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 GBX1Q14549 363 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 SF1Q15637 639 aaKnown RBP13.59□□□□□ -0.23
CPSF1-201ENST00000526271 OASLQ15646 514 aaKnown RBP13.59□□□□□ -0.23
CPSF1-201ENST00000526271 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.59□□□□□ -0.23
CPSF1-201ENST00000526271 CTSL3PQ5NE16 218 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 YOD1Q5VVQ6 348 aaPredicted RBP13.59□□□□□ -0.23
CPSF1-201ENST00000526271 UNC5DQ6UXZ4 953 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 NLRP9Q7RTR0 991 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 ZNF295-AS1Q8N0V1 137 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 SIRT6Q8N6T7 355 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 OR4L1Q8NH43 312 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 HMGCLL1Q8TB92 370 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 CCDC120Q96HB5 630 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 MIPEPQ99797 713 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.59□□□□□ -0.23
CPSF1-201ENST00000526271 PTGFRNQ9P2B2 879 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 GALPQ9UBC7 116 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 ZC3H7BQ9UGR2 993 aaKnown RBP13.59□□□□□ -0.23
CPSF1-201ENST00000526271 C3orf18Q9UK00 162 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 RIMKLBQ9ULI2 386 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 TCAF1Q9Y4C2 921 aa13.59□□□□□ -0.23
CPSF1-201ENST00000526271 TARM1B6A8C7 271 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 C19orf84I3L1E1 186 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 FOXS1O43638 330 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 ITGAMP11215 1152 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 ACPPP15309 386 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 KRTAP10-9P60411 292 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 ADORA2A-AS1P86434 159 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 PMP22Q01453 160 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 PLOD1Q02809 727 aaPredicted RBP13.58□□□□□ -0.24
CPSF1-201ENST00000526271 EEF1A2Q05639 463 aaKnown RBP13.58□□□□□ -0.24
CPSF1-201ENST00000526271 PCOLCEQ15113 449 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 SYT16Q17RD7 645 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 HKDC1Q2TB90 917 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 TCTE1Q5JU00 501 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 AFTPHQ6ULP2 937 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 FAM180AQ6UWF9 173 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 TXLNBQ8N3L3 684 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 BCORP1Q8N888 145 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 ASZ1Q8WWH4 475 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 PPP1R2P1Q96PQ5 205 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 EPS8L2Q9H6S3 715 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 ZNF304Q9HCX3 659 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 COPG2Q9UBF2 871 aa13.58□□□□□ -0.24
CPSF1-201ENST00000526271 NXT1Q9UKK6 140 aaKnown RBP13.58□□□□□ -0.24
CPSF1-201ENST00000526271 IGHV1-45A0A0A0MS14 117 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 A0A1B0GUH1 482 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 H0YGG7 62 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 P2RX6O15547 441 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 WDPCPO95876 746 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 FTCDO95954 541 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 F7P08709 466 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-201ENST00000526271 CCDC175P0C221 793 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 ERGP11308 486 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 ST13P50502 369 aaKnown RBP13.57□□□□□ -0.24
CPSF1-201ENST00000526271 ARF3P61204 181 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-201ENST00000526271 CRADDP78560 199 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 KIF5AQ12840 1032 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 CDH17Q12864 832 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 ART3Q13508 389 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 P3H1Q32P28 736 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 ZC3H12BQ5HYM0 836 aaKnown RBP13.57□□□□□ -0.24
CPSF1-201ENST00000526271 FAAH2Q6GMR7 532 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 KIAA1328Q86T90 577 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 TTC29Q8NA56 475 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-201ENST00000526271 COG1Q8WTW3 980 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 HAS2Q92819 552 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 ZUFSPQ96AP4 578 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 MIEF2Q96C03 454 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 CALR3Q96L12 384 aaKnown RBP13.57□□□□□ -0.24
CPSF1-201ENST00000526271 BIRC8Q96P09 236 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 NPAS2Q99743 824 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 TRIM8Q9BZR9 551 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 CHRAC1Q9NRG0 131 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 TREX1Q9NSU2 369 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 RUVBL1Q9Y265 456 aaKnown RBP13.57□□□□□ -0.24
CPSF1-201ENST00000526271 PPP2R2CQ9Y2T4 447 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.57□□□□□ -0.24
CPSF1-201ENST00000526271 ITPR3Q14573 2671 aa13.57□□□□□ -0.24
CPSF1-201ENST00000526271 SPG11Q96JI7 2443 aa13.56□□□□□ -0.24
CPSF1-201ENST00000526271 ZNF469Q96JG9 3925 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-201ENST00000526271 LOC102723996A0A087X1L8 192 aa13.56□□□□□ -0.24
CPSF1-201ENST00000526271 HEATR9A2RTY3 570 aa13.56□□□□□ -0.24
CPSF1-201ENST00000526271 IDSB3KWA1 339 aa13.56□□□□□ -0.24
CPSF1-201ENST00000526271 MAP2K7O14733 419 aa13.56□□□□□ -0.24
CPSF1-201ENST00000526271 PRMT5O14744 637 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-201ENST00000526271 ZNHIT1O43257 154 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms