RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 PFN3P60673 137 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 IRF8Q02556 426 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 CTU2Q2VPK5 515 aaKnown RBP20.61■□□□□ 0.89
VPS28-205ENST00000526204 SLC44A4Q53GD3 710 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 PRAMEF9Q5VWM5 478 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 RBM23Q86U06 439 aaKnown RBP20.61■□□□□ 0.89
VPS28-205ENST00000526204 RASGRP3Q8IV61 690 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 MIPOL1Q8TD10 442 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 STARD8Q92502 1023 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 ELMO1Q92556 727 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 METTL2AQ96IZ6 378 aaKnown RBP20.61■□□□□ 0.89
VPS28-205ENST00000526204 DEFB118Q96PH6 123 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 PANX1Q96RD7 426 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 FAM83DQ9H4H8 585 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 IL1RAPQ9NPH3 570 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 CD84Q9UIB8 345 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 RPS6KA6Q9UK32 745 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 PSME2Q9UL46 239 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 SNX5Q9Y5X3 404 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 CLIC1O00299 241 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 UGT2B11O75310 529 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 DCDC1P59894 354 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 TLE2Q04725 743 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 ANKRD26P1Q6NSI1 321 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 ELMSAN1Q6PJG2 1045 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 SERPINA13PQ6UXR4 307 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 CHPFQ8IZ52 775 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 FRS2Q8WU20 508 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 TIFAQ96CG3 184 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 GABARAPL1Q9H0R8 117 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 ATG10Q9H0Y0 220 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 TM9SF3Q9HD45 589 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 LTB4R2Q9NPC1 389 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 PAK6Q9NQU5 681 aaPredicted RBP20.6■□□□□ 0.89
VPS28-205ENST00000526204 FAM120CQ9NX05 1096 aaKnown RBP20.6■□□□□ 0.89
VPS28-205ENST00000526204 VPS29Q9UBQ0 182 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 SLCO3A1Q9UIG8 710 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 U3KQV3 271 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 hCG_2014768A0A024R1R8 64 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 TMX2-CTNND1H3BSU7 103 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 QSOX1O00391 747 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 FPGTO14772 594 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 FKTNO75072 461 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 SLCO2B1O94956 709 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 EPN2O95208 641 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 ZNF682O95780 498 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 GJA1P17302 382 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 CA8P35219 290 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 RANBP1P43487 201 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 RECQLP46063 649 aaPredicted RBP20.6■□□□□ 0.89
VPS28-205ENST00000526204 C21orf58P58505 322 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 TMED1Q13445 227 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 MOGQ16653 247 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 Q6ZVU0 165 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 TMCO2Q7Z6W1 182 aaPredicted RBP20.6■□□□□ 0.89
VPS28-205ENST00000526204 ZNF557Q8N988 423 aaPredicted RBP20.6■□□□□ 0.89
VPS28-205ENST00000526204 SETD9Q8NE22 299 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 BPIFB6Q8NFQ5 453 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 OR8J2Q8NGG1 315 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 FBLIM1Q8WUP2 373 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 ATL1Q8WXF7 558 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 ZNF566Q969W8 418 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 PPP1R14BQ96C90 147 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 REXO4Q9GZR2 422 aaKnown RBP20.6■□□□□ 0.89
VPS28-205ENST00000526204 TRIT1Q9H3H1 467 aaKnown RBP20.6■□□□□ 0.89
VPS28-205ENST00000526204 RAD18Q9NS91 495 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 TBC1D23Q9NUY8 699 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 OGDHLQ9ULD0 1010 aa20.6■□□□□ 0.89
VPS28-205ENST00000526204 RUVBL1Q9Y265 456 aaKnown RBP20.6■□□□□ 0.89
VPS28-205ENST00000526204 SLC1A7O00341 560 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 BCKDKO14874 412 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 BCL10O95999 233 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 GSTM1P09488 218 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 PABPC1P11940 636 aaKnown RBP20.59■□□□□ 0.89
VPS28-205ENST00000526204 GPX2P18283 190 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 IGFBP5P24593 272 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 VIPR1P32241 457 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 PLA2G16P53816 162 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 GSTM4Q03013 218 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 PPP1R8Q12972 351 aaKnown RBP20.59■□□□□ 0.89
VPS28-205ENST00000526204 VMACQ2NL98 169 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 LRRC73Q5JTD7 316 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 ANKRD34AQ69YU3 496 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 OR2T5Q6IEZ7 315 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 ZCCHC8Q6NZY4 707 aaKnown RBP20.59■□□□□ 0.89
VPS28-205ENST00000526204 ZNF551Q7Z340 670 aaPredicted RBP20.59■□□□□ 0.89
VPS28-205ENST00000526204 CHST14Q8NCH0 376 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 PIK3C3Q8NEB9 887 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 OR2T29Q8NH02 315 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 CLP1Q92989 425 aaKnown RBP20.59■□□□□ 0.89
VPS28-205ENST00000526204 VWCEQ96DN2 955 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 HSPBAP1Q96EW2 488 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 NODALQ96S42 347 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 NAALAD2Q9Y3Q0 740 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 B3GALT4O96024 378 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 DMC1Q14565 340 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 ASTLQ6HA08 431 aaPredicted RBP20.59■□□□□ 0.89
VPS28-205ENST00000526204 TMEM25Q86YD3 366 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 OR2A12Q8NGT7 310 aa20.59■□□□□ 0.89
VPS28-205ENST00000526204 SMG9Q9H0W8 520 aaKnown RBP20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms