RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 AP1ARQ63HQ0 302 aa14.42□□□□□ -0.1
NUP54-217ENST00000514987 TMEM215Q68D42 235 aa14.42□□□□□ -0.1
NUP54-217ENST00000514987 TMEM214Q6NUQ4 689 aaKnown RBP14.42□□□□□ -0.1
NUP54-217ENST00000514987 ENPP6Q6UWR7 440 aa14.42□□□□□ -0.1
NUP54-217ENST00000514987 DNAJC14Q6Y2X3 702 aaPredicted RBP14.42□□□□□ -0.1
NUP54-217ENST00000514987 HIPK1Q86Z02 1210 aa14.42□□□□□ -0.1
NUP54-217ENST00000514987 FBXO15Q8NCQ5 510 aaPredicted RBP14.42□□□□□ -0.1
NUP54-217ENST00000514987 PJA1Q8NG27 643 aa14.42□□□□□ -0.1
NUP54-217ENST00000514987 OR8J2Q8NGG1 315 aa14.42□□□□□ -0.1
NUP54-217ENST00000514987 GFM2Q969S9 779 aaKnown RBP14.42□□□□□ -0.1
NUP54-217ENST00000514987 TBC1D20Q96BZ9 403 aa14.42□□□□□ -0.1
NUP54-217ENST00000514987 PYCR2Q96C36 320 aa14.42□□□□□ -0.1
NUP54-217ENST00000514987 PYURFQ96I23 114 aa14.42□□□□□ -0.1
NUP54-217ENST00000514987 APOLD1Q96LR9 279 aa14.42□□□□□ -0.1
NUP54-217ENST00000514987 TBCDQ9BTW9 1192 aa14.42□□□□□ -0.1
NUP54-217ENST00000514987 SPATA9Q9BWV2 254 aa14.42□□□□□ -0.1
NUP54-217ENST00000514987 ZCCHC2Q9C0B9 1178 aaKnown RBP14.42□□□□□ -0.1
NUP54-217ENST00000514987 HPS4Q9NQG7 708 aa14.42□□□□□ -0.1
NUP54-217ENST00000514987 SPATA6Q9NWH7 488 aaPredicted RBP14.42□□□□□ -0.1
NUP54-217ENST00000514987 IFT80Q9P2H3 777 aaPredicted RBP14.42□□□□□ -0.1
NUP54-217ENST00000514987 DPP7Q9UHL4 492 aa14.42□□□□□ -0.1
NUP54-217ENST00000514987 MBD1Q9UIS9 605 aaPredicted RBP14.42□□□□□ -0.1
NUP54-217ENST00000514987 PPT2Q9UMR5 302 aa14.42□□□□□ -0.1
NUP54-217ENST00000514987 AP1M2Q9Y6Q5 423 aa14.42□□□□□ -0.1
NUP54-217ENST00000514987 MYOFQ9NZM1 2061 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 SLC5A10A0PJK1 596 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 HIDE1A8MVS5 230 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 ARHGEF33A8MVX0 844 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 FADS2P1A8MWK0 482 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 ELFN1P0C7U0 828 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 PPIBP23284 216 aaKnown RBP14.41□□□□□ -0.1
NUP54-217ENST00000514987 PTPN6P29350 595 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 RPS6KA3P51812 740 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 CBX2Q14781 532 aaPredicted RBP14.41□□□□□ -0.1
NUP54-217ENST00000514987 PRSS36Q5K4E3 855 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 AGTRAPQ6RW13 159 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 THAP5Q7Z6K1 395 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 SLC22A15Q8IZD6 547 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 C8orf59Q8N0T1 100 aaPredicted RBP14.41□□□□□ -0.1
NUP54-217ENST00000514987 RASGEF1AQ8N9B8 481 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 OR56A3Q8NH54 315 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 WDR20Q8TBZ3 569 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 SP7Q8TDD2 431 aaPredicted RBP14.41□□□□□ -0.1
NUP54-217ENST00000514987 AP2M1Q96CW1 435 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 REPS1Q96D71 796 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 PAWRQ96IZ0 340 aaKnown RBP14.41□□□□□ -0.1
NUP54-217ENST00000514987 RAD9AQ99638 391 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 ATG10Q9H0Y0 220 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 ING2Q9H160 280 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 STOX2Q9P2F5 926 aaPredicted RBP14.41□□□□□ -0.1
NUP54-217ENST00000514987 RPS6KA6Q9UK32 745 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 RWDD3Q9Y3V2 267 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 ORC6Q9Y5N6 252 aa14.41□□□□□ -0.1
NUP54-217ENST00000514987 OR2AG2A6NM03 316 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 PRAMEF4O60810 478 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 MTX2O75431 263 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 RFPL2O75678 378 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 SERPINA1P01009 418 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 PRNPP04156 253 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 PCNAP12004 261 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 TACR1P25103 407 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 CTNNB1P35222 781 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 DGKGP49619 791 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 NUP107P57740 925 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 ACSM2AQ08AH3 577 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 TMEM115Q12893 351 aaPredicted RBP14.4□□□□□ -0.1
NUP54-217ENST00000514987 PPIGQ13427 754 aaKnown RBP eCLIP14.4□□□□□ -0.1
NUP54-217ENST00000514987 TOP3AQ13472 1001 aaPredicted RBP14.4□□□□□ -0.1
NUP54-217ENST00000514987 IL18R1Q13478 541 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 DOC2AQ14183 400 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 ACOX1Q15067 660 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 GTDC1Q4AE62 458 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 ZC3H12BQ5HYM0 836 aaKnown RBP14.4□□□□□ -0.1
NUP54-217ENST00000514987 PRAMEF9Q5VWM5 478 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 ACSM2BQ68CK6 577 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 ZNF773Q6PK81 442 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 LIPIQ6XZB0 460 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 ZNF765Q7L2R6 523 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 OFCC1Q8IZS5 231 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 FAM86B1Q8N7N1 296 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 VPS37AQ8NEZ2 397 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 CYB5D2Q8WUJ1 264 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 HDAC2Q92769 488 aaKnown RBP14.4□□□□□ -0.1
NUP54-217ENST00000514987 TMIGD2Q96BF3 282 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 INPP5KQ9BT40 448 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 NPLQ9BXD5 320 aaPredicted RBP14.4□□□□□ -0.1
NUP54-217ENST00000514987 CARS2Q9HA77 564 aaKnown RBP14.4□□□□□ -0.1
NUP54-217ENST00000514987 THG1LQ9NWX6 298 aaKnown RBP14.4□□□□□ -0.1
NUP54-217ENST00000514987 C3orf18Q9UK00 162 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 CORO2BQ9UQ03 480 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 SLC27A6Q9Y2P4 619 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 WNT6Q9Y6F9 365 aa14.4□□□□□ -0.1
NUP54-217ENST00000514987 FPGTO14772 594 aa14.39□□□□□ -0.11
NUP54-217ENST00000514987 HOXC11O43248 304 aaPredicted RBP14.39□□□□□ -0.11
NUP54-217ENST00000514987 TSPAN6O43657 245 aa14.39□□□□□ -0.11
NUP54-217ENST00000514987 EPN2O95208 641 aa14.39□□□□□ -0.11
NUP54-217ENST00000514987 ADH1CP00326 375 aa14.39□□□□□ -0.11
NUP54-217ENST00000514987 CTSLP07711 333 aa14.39□□□□□ -0.11
NUP54-217ENST00000514987 CISD3P0C7P0 127 aa14.39□□□□□ -0.11
NUP54-217ENST00000514987 JUNBP17275 347 aaPredicted RBP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms