RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 TRIM49D1C9J1S8 452 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 TLX3O43711 291 aaPredicted RBP13.72□□□□□ -0.21
NUP54-216ENST00000514901 KLHL2O95198 593 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 MAGP20916 626 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 PSMB5P28074 263 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 HSD17B3P37058 310 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 MAGEA12P43365 314 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 RELAQ04206 551 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 ACAP2Q15057 778 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 TGFBIQ15582 683 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 GPR19Q15760 415 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 ZIC1Q15915 447 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 PRAMEF13Q5VWM6 474 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 SULT1C3Q6IMI6 304 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 MBOAT1Q6ZNC8 495 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 CDHR3Q6ZTQ4 885 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 ISCA2Q86U28 154 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 FAM20CQ8IXL6 584 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 SPATA6LQ8N4H0 392 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 DNAJC22Q8N4W6 341 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 RHEBL1Q8TAI7 183 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 ZNF501Q96CX3 271 aaPredicted RBP13.72□□□□□ -0.21
NUP54-216ENST00000514901 MED8Q96G25 268 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 EGFL8Q99944 293 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 ACAT2Q9BWD1 397 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 ATG10Q9H0Y0 220 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 FAM60AQ9NP50 221 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 IGSF5Q9NSI5 407 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 FOXJ2Q9P0K8 574 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 TAC3Q9UHF0 121 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 PLCL2Q9UPR0 1127 aa13.72□□□□□ -0.21
NUP54-216ENST00000514901 TMEM184BQ9Y519 407 aaPredicted RBP13.72□□□□□ -0.21
NUP54-216ENST00000514901 SYCE1LA8MT33 242 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 TMEM150CB9EJG8 249 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 TAF4O00268 1085 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 SRPX2O60687 465 aaPredicted RBP13.71□□□□□ -0.21
NUP54-216ENST00000514901 MT-ND3P03897 115 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 S100BP04271 92 aaPredicted RBP13.71□□□□□ -0.21
NUP54-216ENST00000514901 LIPCP11150 499 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 TFEBP19484 476 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 GCAP28676 217 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 EIF2S3P41091 472 aaKnown RBP13.71□□□□□ -0.21
NUP54-216ENST00000514901 ITGA1P56199 1179 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 TBPL1P62380 186 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 MAP7Q14244 749 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 RASA2Q15283 850 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 FCRL6Q6DN72 434 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 LCTLQ6UWM7 567 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 LRRC69Q6ZNQ3 347 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 TDRPQ86YL5 185 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 MCATQ8IVS2 390 aaKnown RBP13.71□□□□□ -0.21
NUP54-216ENST00000514901 GPR135Q8IZ08 494 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 KCNE4Q8WWG9 221 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 PMEPA1Q969W9 287 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 RHBDF1Q96CC6 855 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 NXNL1Q96CM4 212 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 TSNARE1Q96NA8 513 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 PLCD4Q9BRC7 762 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 DPH7Q9BTV6 452 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 SPRY4Q9C004 299 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 VPS11Q9H270 941 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 CNOT10Q9H9A5 744 aaKnown RBP13.71□□□□□ -0.21
NUP54-216ENST00000514901 TMEM184CQ9NVA4 438 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 RNF112Q9ULX5 631 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 PCDHB3Q9Y5E6 796 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 AP1M2Q9Y6Q5 423 aa13.71□□□□□ -0.21
NUP54-216ENST00000514901 OR2A25A4D2G3 310 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 E7EQ34 232 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 KERAO60938 352 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 STK17BO94768 372 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 IPO13O94829 963 aaKnown RBP13.7□□□□□ -0.22
NUP54-216ENST00000514901 HBQ1P09105 142 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 RBP1P09455 135 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 NPPBP16860 134 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 GGT5P36269 586 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 GABRA4P48169 554 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 ATP1A2P50993 1020 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 DLG1Q12959 904 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 OR4D1Q15615 310 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 TSNAXIP1Q2TAA8 658 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 TCTE1Q5JU00 501 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 PWWP2BQ6NUJ5 590 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 TLDC1Q6P9B6 456 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 LCA5Q86VQ0 697 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 C17orf64Q86WR6 236 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 ZFAND4Q86XD8 727 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 DTX1Q86Y01 620 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 TMEM126BQ8IUX1 230 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 CENPLQ8N0S6 344 aaPredicted RBP13.7□□□□□ -0.22
NUP54-216ENST00000514901 MREGQ8N565 214 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 ESX1Q8N693 406 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 ACMSDQ8TDX5 336 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 KCTD4Q8WVF5 259 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 ALKBH8Q96BT7 664 aaKnown RBP13.7□□□□□ -0.22
NUP54-216ENST00000514901 PTERQ96BW5 349 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 ULBP3Q9BZM4 244 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 UNKQ9C0B0 810 aaKnown RBP13.7□□□□□ -0.22
NUP54-216ENST00000514901 ALG9Q9H6U8 611 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 ABCF3Q9NUQ8 709 aa13.7□□□□□ -0.22
NUP54-216ENST00000514901 EURLQ9NYK6 297 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms