RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 BCKDHAP12694 445 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 AMD1P17707 334 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 XRCC1P18887 633 aaPredicted RBP8.1□□□□□ -1.11
RNF4-220ENST00000513578 IGFBP4P22692 258 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 SLC6A2P23975 617 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 PTDSS1P48651 473 aaKnown RBP8.1□□□□□ -1.11
RNF4-220ENST00000513578 TBPL1P62380 186 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 YPEL5P62699 121 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 MS4A2Q01362 244 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 HMGCS1Q01581 520 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 PWP1Q13610 501 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 FLOT2Q14254 428 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 SMAD2Q15796 467 aaKnown RBP8.1□□□□□ -1.11
RNF4-220ENST00000513578 DPY19L1Q2PZI1 675 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 PYCR3Q53H96 274 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 MED27Q6P2C8 311 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 WASH2PQ6VEQ5 465 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 PTRH1Q86Y79 214 aaKnown RBP8.1□□□□□ -1.11
RNF4-220ENST00000513578 HID1Q8IV36 788 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 RIMKLAQ8IXN7 391 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 OR2T34Q8NGX1 318 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 GANCQ8TET4 914 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 STARD8Q92502 1023 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 FAM3CQ92520 227 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 TFGQ92734 400 aaPredicted RBP8.1□□□□□ -1.11
RNF4-220ENST00000513578 UBE2E3Q969T4 207 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 TMEM125Q96AQ2 219 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 TESCQ96BS2 214 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 PHF12Q96QT6 1004 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 MENTQ9BUN1 341 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 DPY30Q9C005 99 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 CHRDQ9H2X0 955 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 TRIT1Q9H3H1 467 aaKnown RBP8.1□□□□□ -1.11
RNF4-220ENST00000513578 CLMPQ9H6B4 373 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 NT5DC2Q9H857 520 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 PELI2Q9HAT8 420 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 WASH6PQ9NQA3 447 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 CCDC177Q9NQR7 707 aaPredicted RBP8.1□□□□□ -1.11
RNF4-220ENST00000513578 NMRK1Q9NWW6 199 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 ADA2Q9NZK5 511 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 VPS29Q9UBQ0 182 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 ADGRE2Q9UHX3 823 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 PSMD13Q9UNM6 376 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 RUVBL1Q9Y265 456 aaKnown RBP8.1□□□□□ -1.11
RNF4-220ENST00000513578 MAN2B2Q9Y2E5 1009 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 C15orf41Q9Y2V0 281 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 HS3ST3A1Q9Y663 406 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 HEATR5BQ9P2D3 2071 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 BAHCC1Q9P281 2608 aa8.1□□□□□ -1.11
RNF4-220ENST00000513578 PLXND1Q9Y4D7 1925 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 TBC1D3DA0A087WVF3 549 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 TBC1D3IA0A087WXS9 549 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 TBC1D3EA0A087X179 549 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 TBC1D3KA0A087X1G2 549 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 TCRBV3S1A0A5B6 114 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 KANSL1LA0AUZ9 987 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 TBC1D3FA6NER0 549 aaPredicted RBP8.09□□□□□ -1.11
RNF4-220ENST00000513578 LRRC72A6NJI9 287 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 AQP12BA6NM10 295 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 TBC1D3LB9A6J9 549 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 H0Y3Z8 333 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 H3BNX3 289 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 NME4O00746 187 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 FPGTO14772 594 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 TNFRSF10CO14798 259 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 LATO43561 262 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 SORBS2O94875 1100 aaKnown RBP8.09□□□□□ -1.11
RNF4-220ENST00000513578 FUCA1P04066 466 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 CAPNS1P04632 268 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 SLC35G4P0C7Q5 338 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 TBC1D3HP0C7X1 549 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 ACADMP11310 421 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 NDUFV2P19404 249 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 IDSP22304 550 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 SERPINB1P30740 379 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 NUDT1P36639 197 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 PIK3CBP42338 1070 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 CCR5P51681 352 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 SLC7A2P52569 658 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 NME5P56597 212 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 RHDQ02161 417 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 MTAPQ13126 283 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 TDGQ13569 410 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 NFYCQ13952 458 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 NFATC4Q14934 902 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 HIST2H2ACQ16777 129 aaPredicted RBP8.09□□□□□ -1.11
RNF4-220ENST00000513578 SLC44A4Q53GD3 710 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 PAGE3Q5JUK9 113 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 TBC1D3GQ6DHY5 549 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 HIST2H2AA3Q6FI13 130 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 TBC1D3CQ6IPX1 549 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 LCN8Q6JVE9 175 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 GALNT18Q6P9A2 607 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 DOK6Q6PKX4 331 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 NXPE4Q6UWF7 544 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 SUSD1Q6UWL2 747 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 TMEM92Q6UXU6 159 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 DLEU7Q6UYE1 221 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 LRRC74BQ6ZQY2 392 aa8.09□□□□□ -1.11
RNF4-220ENST00000513578 AQP12AQ8IXF9 295 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms