RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 WDR74Q6RFH5 385 aaPredicted RBP9.69□□□□□ -0.86
NUP54-203ENST00000504173 CLEC14AQ86T13 490 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 ISCA2Q86U28 154 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 TRABD2AQ86V40 505 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 LCA5Q86VQ0 697 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 SRRM1Q8IYB3 904 aaKnown RBP9.69□□□□□ -0.86
NUP54-203ENST00000504173 SYTL1Q8IYJ3 562 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 ADGRF3Q8IZF5 1079 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 LMNTD1Q8N9Z9 388 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 LINC01555Q8NAE3 123 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 UNC13CQ8NB66 2214 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 ZNF480Q8WV37 535 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 ATL1Q8WXF7 558 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 FBXL8Q96CD0 374 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 ZDHHC12Q96GR4 267 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 GPR78Q96P69 363 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 TGM7Q96PF1 710 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 ZNF358Q9NW07 568 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 ACTR10Q9NZ32 417 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 NUDT4Q9NZJ9 180 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 CD274Q9NZQ7 290 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 STOX2Q9P2F5 926 aaPredicted RBP9.69□□□□□ -0.86
NUP54-203ENST00000504173 XPR1Q9UBH6 696 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 EPHA6Q9UF33 1036 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 KLHL3Q9UH77 587 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 ENTPD2Q9Y5L3 495 aa9.69□□□□□ -0.86
NUP54-203ENST00000504173 MN1Q10571 1320 aaPredicted RBP9.68□□□□□ -0.86
NUP54-203ENST00000504173 NCF1BA6NI72 391 aaPredicted RBP9.68□□□□□ -0.86
NUP54-203ENST00000504173 SYCE1LA8MT33 242 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 NCF1CA8MVU1 366 aaPredicted RBP9.68□□□□□ -0.86
NUP54-203ENST00000504173 COPEO14579 308 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 MT-CO3P00414 261 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 GSTA1P08263 222 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 NCF1P14598 390 aaPredicted RBP9.68□□□□□ -0.86
NUP54-203ENST00000504173 MPSTP25325 297 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 IMPA1P29218 277 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 OAS2P29728 719 aaKnown RBP9.68□□□□□ -0.86
NUP54-203ENST00000504173 CCT5P48643 541 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 CLDN6P56747 220 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 CDKL1Q00532 357 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 FASTKQ14296 549 aaKnown RBP9.68□□□□□ -0.86
NUP54-203ENST00000504173 KIR2DS3Q14952 304 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 TECRLQ5HYJ1 363 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 SNAP47Q5SQN1 464 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 PHF19Q5T6S3 580 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 CDCP2Q5VXM1 449 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 TMEM71Q6P5X7 295 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 AGTRAPQ6RW13 159 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 FAM92BQ6ZTR7 304 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 TMPRSS9Q7Z410 1059 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 C4orf33Q8N1A6 199 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 TCAIMQ8N3R3 496 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 PPFIBP2Q8ND30 876 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 OR4D9Q8NGE8 314 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 RHEBL1Q8TAI7 183 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 HMGCLL1Q8TB92 370 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 SMPDL3AQ92484 453 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 SLC22A18Q96BI1 424 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 ALKBH8Q96BT7 664 aaKnown RBP9.68□□□□□ -0.86
NUP54-203ENST00000504173 CCDC74BQ96LY2 380 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 ZNF578Q96N58 590 aaPredicted RBP9.68□□□□□ -0.86
NUP54-203ENST00000504173 TMEM74Q96NL1 305 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 DEPDC7Q96QD5 511 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 SMC6Q96SB8 1091 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 ATOH8Q96SQ7 321 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 CD180Q99467 661 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 MRPL57Q9BQC6 102 aaKnown RBP9.68□□□□□ -0.86
NUP54-203ENST00000504173 RAB33BQ9H082 229 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 ATG10Q9H0Y0 220 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 STMN4Q9H169 189 aaPredicted RBP9.68□□□□□ -0.86
NUP54-203ENST00000504173 CCDC177Q9NQR7 707 aaPredicted RBP9.68□□□□□ -0.86
NUP54-203ENST00000504173 ABCF3Q9NUQ8 709 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 SPHK1Q9NYA1 384 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 WWOXQ9NZC7 414 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 TMEM9Q9P0T7 183 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 SENP1Q9P0U3 644 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 CPSF2Q9P2I0 782 aaKnown RBP9.68□□□□□ -0.86
NUP54-203ENST00000504173 DCDC2Q9UHG0 476 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 POMT2Q9UKY4 750 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 CLCA2Q9UQC9 943 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 ANKRD12Q6UB98 2062 aa9.68□□□□□ -0.86
NUP54-203ENST00000504173 OTOGQ6ZRI0 2925 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 BSNQ9UPA5 3926 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 IGHV5-10-1A0A0J9YXX1 117 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 A8MU76 341 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 E7ENX8 843 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 K7ENP7 123 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 UBXN8O00124 270 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 SMIM24O75264 130 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 CSO75390 466 aaKnown RBP9.67□□□□□ -0.86
NUP54-203ENST00000504173 RASSF9O75901 435 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 C9P02748 559 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 THRAP10827 490 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 GFAPP14136 432 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 UGT2B7P16662 529 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 CDH3P22223 829 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 PRDX3P30048 256 aaKnown RBP9.67□□□□□ -0.86
NUP54-203ENST00000504173 PEBP1P30086 187 aaKnown RBP9.67□□□□□ -0.86
NUP54-203ENST00000504173 CRHR1P34998 444 aa9.67□□□□□ -0.86
NUP54-203ENST00000504173 RPA3P35244 121 aaPredicted RBP9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms