RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 POPDC2Q9HBU9 364 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 DYRK4Q9NR20 520 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 FAM49BQ9NUQ9 324 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 ASIC5Q9NY37 505 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 STEAP1Q9UHE8 339 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 CYTH4Q9UIA0 394 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 SLC25A13Q9UJS0 675 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 TSPAN16Q9UKR8 245 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 OSGIN2Q9Y236 505 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 SNX13Q9Y5W8 968 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 MXRA5Q9NR99 2828 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 TBC1D3DA0A087WVF3 549 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 TBC1D3IA0A087WXS9 549 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 TBC1D3EA0A087X179 549 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 TBC1D3KA0A087X1G2 549 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 SPTY2D1-AS1A0A0U1RR47 76 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 A0A1W2PQ67 120 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 TCRBV5S1A1TA0A578 114 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 BICDL2A1A5D9 508 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 GTPBP10A4D1E9 387 aaKnown RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 TBC1D3FA6NER0 549 aaPredicted RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 ZSCAN5CA6NGD5 496 aaPredicted RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 EIF3CLB5ME19 914 aaKnown RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 TBC1D3LB9A6J9 549 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 LMO7DNF2Z398 122 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 NTN3O00634 580 aaPredicted RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 PSMA7O14818 248 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 SPRY2O43597 315 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 KLRC4O43908 158 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 RAD1O60671 282 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 TBL1XO60907 577 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 HSF2BPO75031 334 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 SMC2O95347 1197 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 IGLV3-25P01717 112 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 CSF2P04141 144 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 RPLP0P05388 317 aaKnown RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 ALPIP09923 528 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 TBC1D3HP0C7X1 549 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 TCN2P20062 427 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 ATP5F1P24539 256 aaPredicted RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 NFKBIAP25963 317 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 HNRNPH3P31942 346 aaKnown RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 CCKBRP32239 447 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 MAN1A1P33908 653 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 IST1P53990 364 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 CDH4P55283 916 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 YWHAZP63104 245 aaKnown RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 TXNL4AP83876 142 aaKnown RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 TIAL1Q01085 375 aaKnown RBP eCLIP3.88□□□□□ -1.79
USP54-217ENST00000498213 ADIGQ0VDE8 80 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 ART3Q13508 389 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 LARS2Q15031 903 aaKnown RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 DAZAP2Q15038 168 aaPredicted RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 FAM133BQ5BKY9 247 aaKnown RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 EFHC1Q5JVL4 640 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 BRMS1LQ5PSV4 323 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 C1orf220Q5T0J3 134 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 LCE1AQ5T7P2 110 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 TBC1D3GQ6DHY5 549 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 TBC1D3CQ6IPX1 549 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 JMJD6Q6NYC1 403 aaPredicted RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 BIVMQ86UB2 503 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 TMEM135Q86UB9 458 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 FJX1Q86VR8 437 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 P3H2Q8IVL5 708 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 WDR75Q8IWA0 830 aaKnown RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 NELFCDQ8IXH7 590 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 TBC1D3Q8IZP1 549 aaPredicted RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 PCDH20Q8N6Y1 951 aaKnown RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 C11orf44Q8N8P7 122 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 C1orf131Q8NDD1 294 aaKnown RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 ZNF397Q8NF99 534 aaPredicted RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 TAS1R2Q8TE23 839 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 NRGNQ92686 78 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 SNRNP40Q96DI7 357 aaKnown RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 PAGE5Q96GU1 130 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 DHTKD1Q96HY7 919 aaPredicted RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 EIF3CQ99613 913 aaKnown RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 CALN1Q9BXU9 219 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 FGFBP2Q9BYJ0 223 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 ULBP1Q9BZM6 244 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 SPRTNQ9H040 489 aaPredicted RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 APOBEC3GQ9HC16 384 aaKnown RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 AKAP7Q9P0M2 348 aaPredicted RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 SPASTQ9UBP0 616 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 DNAJB11Q9UBS4 358 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 ARMCX3Q9UH62 379 aaPredicted RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 STAP1Q9ULZ2 295 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 HPSEQ9Y251 543 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 CEP83Q9Y592 693 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 MRPS18BQ9Y676 258 aaKnown RBP3.88□□□□□ -1.79
USP54-217ENST00000498213 PLXNA2O75051 1894 aa3.88□□□□□ -1.79
USP54-217ENST00000498213 POLEQ07864 2286 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 LOC101059948A0A1B0GTJ6 334 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 A0A1W2PQM1 296 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 ILVBLA1L0T0 632 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 YJEFN3A6XGL0 299 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 D6RAR5 112 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 E5RJQ4 531 aa3.87□□□□□ -1.79
USP54-217ENST00000498213 E7ENQ6 273 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms