RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 POLA1P09884 1462 aaPredicted RBP4.83□□□□□ -1.64
SF3B1-212ENST00000496458 IFT140Q96RY7 1462 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 RAD54L2Q9Y4B4 1467 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 SOGA1O94964 1423 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 EPHB6O15197 1021 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 GLRA3O75311 464 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 ABCB1P08183 1280 aaPredicted RBP4.83□□□□□ -1.64
SF3B1-212ENST00000496458 LINGO3P0C6S8 592 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 OAS2P29728 719 aaKnown RBP4.83□□□□□ -1.64
SF3B1-212ENST00000496458 CSTF2P33240 577 aaKnown RBP eCLIP4.83□□□□□ -1.64
SF3B1-212ENST00000496458 NNMTP40261 264 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 LBX1P52954 281 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 KRT83P78385 493 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 TNIP1Q15025 636 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 SLC35D3Q5M8T2 416 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 C6orf163Q5TEZ5 329 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 LCN1P1Q5VSP4 162 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 MFSD12Q6NUT3 480 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 Q6ZRP5 223 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 NUP54Q7Z3B4 507 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 LRRTM1Q86UE6 522 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 TSPAN14Q8NG11 270 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 RSPH1Q8WYR4 309 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 PIGBQ92521 554 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 C10orf90Q96M02 699 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 NSMCE3Q96MG7 304 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 NECTIN4Q96NY8 510 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 KRT12Q99456 494 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 CCDC106Q9BWC9 280 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 THAP2Q9H0W7 228 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 MYNNQ9NPC7 610 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 MAN2C1Q9NTJ4 1040 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 HAO2Q9NYQ3 351 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 DDX25Q9UHL0 483 aaKnown RBP4.83□□□□□ -1.64
SF3B1-212ENST00000496458 SLC24A2Q9UI40 661 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 SMAD5-AS1Q9Y6J3 95 aa4.83□□□□□ -1.64
SF3B1-212ENST00000496458 AQRO60306 1485 aaKnown RBP eCLIP4.82□□□□□ -1.642e-6■■□□□ 13.2
SF3B1-212ENST00000496458 FGD5Q6ZNL6 1462 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 WRNQ14191 1432 aaPredicted RBP eCLIP4.82□□□□□ -1.64
SF3B1-212ENST00000496458 hCG_1809904A0A1W2PP81 198 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 A0A1W2PPE2 198 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 A0A1W2PR64 198 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 NEMP2A6NFY4 417 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 C15orf61A6NNL5 157 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 CDK2AP2O75956 126 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 SEC24AO95486 1093 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 TRUB2O95900 331 aaKnown RBP4.82□□□□□ -1.64
SF3B1-212ENST00000496458 IGHV2-70P01814 119 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 FAM200BP0CF97 657 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 ZSCAN5DPP0CG00 497 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 KRT20P35900 424 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 ENPP2Q13822 863 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 IL11RAQ14626 422 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 NECTIN1Q15223 517 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 BMP2KLQ5H9B9 411 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 SLC25A47Q6Q0C1 308 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 ZNF519Q8TB69 540 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 FAM222BQ8WU58 562 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 TEKT4Q8WW24 435 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 CENPTQ96BT3 561 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 ZNF486Q96H40 463 aaPredicted RBP4.82□□□□□ -1.64
SF3B1-212ENST00000496458 CDHR1Q96JP9 859 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 ZMAT2Q96NC0 199 aaKnown RBP4.82□□□□□ -1.64
SF3B1-212ENST00000496458 APOL6Q9BWW8 343 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 UPF3AQ9H1J1 476 aaKnown RBP4.82□□□□□ -1.64
SF3B1-212ENST00000496458 SPHK2Q9NRA0 654 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 PANK4Q9NVE7 773 aa4.82□□□□□ -1.64
SF3B1-212ENST00000496458 RAB40ALP0C0E4 278 aa4.81□□□□□ -1.64
SF3B1-212ENST00000496458 CYP2A7P20853 494 aa4.81□□□□□ -1.64
SF3B1-212ENST00000496458 LHCGRP22888 699 aa4.81□□□□□ -1.64
SF3B1-212ENST00000496458 DSCR10P59022 87 aa4.81□□□□□ -1.64
SF3B1-212ENST00000496458 SNAI3Q3KNW1 292 aa4.81□□□□□ -1.64
SF3B1-212ENST00000496458 TCTE1Q5JU00 501 aa4.81□□□□□ -1.64
SF3B1-212ENST00000496458 G2E3Q7L622 706 aa4.81□□□□□ -1.64
SF3B1-212ENST00000496458 LYG1Q8N1E2 194 aa4.81□□□□□ -1.64
SF3B1-212ENST00000496458 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.81□□□□□ -1.64
SF3B1-212ENST00000496458 OR1L3Q8NH93 324 aa4.81□□□□□ -1.64
SF3B1-212ENST00000496458 TSPAN18Q96SJ8 248 aa4.81□□□□□ -1.64
SF3B1-212ENST00000496458 PIGQQ9BRB3 760 aa4.81□□□□□ -1.64
SF3B1-212ENST00000496458 ANKZF1Q9H8Y5 726 aa4.81□□□□□ -1.64
SF3B1-212ENST00000496458 TRPV4Q9HBA0 871 aa4.81□□□□□ -1.64
SF3B1-212ENST00000496458 ZCCHC17Q9NP64 241 aaKnown RBP4.81□□□□□ -1.64
SF3B1-212ENST00000496458 OLAHQ9NV23 265 aa4.81□□□□□ -1.64
SF3B1-212ENST00000496458 RNF150Q9ULK6 438 aa4.81□□□□□ -1.64
SF3B1-212ENST00000496458 TARBP1Q13395 1621 aaKnown RBP4.81□□□□□ -1.64
SF3B1-212ENST00000496458 SYNJ1O43426 1573 aa4.81□□□□□ -1.64
SF3B1-212ENST00000496458 MEX3AA1L020 520 aaKnown RBP4.8□□□□□ -1.64
SF3B1-212ENST00000496458 SYNDIG1LA6NDD5 238 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 ARPC2O15144 300 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 ERAL1O75616 437 aaKnown RBP4.8□□□□□ -1.64
SF3B1-212ENST00000496458 STARD3NLO95772 234 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 SLC2A2P11168 524 aaPredicted RBP4.8□□□□□ -1.64
SF3B1-212ENST00000496458 UGT1A4P22310 534 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 HNF4AP41235 474 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 CCR10P46092 362 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 C2CD6Q53TS8 623 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 SLC10A5Q5PT55 438 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 GARNL3Q5VVW2 1013 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 PRR27Q6MZM9 219 aa4.8□□□□□ -1.64
SF3B1-212ENST00000496458 FAM198BQ6UWH4 519 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms