RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, human

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-223	ENST00000496024	PMS2	P54278	862 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	TBPL1	P62380	186 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	ILF2	Q12905	390 aa	Known RBP	9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	ARHGAP40	Q5TG30	622 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	ICE2	Q659A1	982 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	FAM199X	Q6PEV8	388 aa	Predicted RBP	9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	SBSN	Q6UWP8	590 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	CCDC81	Q6ZN84	652 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	FRA10AC1	Q70Z53	315 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	ADCK2	Q7Z695	626 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	BPHL	Q86WA6	291 aa	Predicted RBP	9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	MCAT	Q8IVS2	390 aa	Known RBP	9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	GPR135	Q8IZ08	494 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	DNAJC22	Q8N4W6	341 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	OR8K5	Q8NH50	307 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	EXT2	Q93063	718 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	PYCR2	Q96C36	320 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	CLIP3	Q96DZ5	547 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	PDLIM5	Q96HC4	596 aa	Known RBP	9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	FCRL4	Q96PJ5	515 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	PAFAH2	Q99487	392 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	EGFL8	Q99944	293 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	SPRY4	Q9C004	299 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	ACTR5	Q9H9F9	607 aa	Predicted RBP	9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	POPDC3	Q9HBV1	291 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	CCDC177	Q9NQR7	707 aa	Predicted RBP	9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	STARD5	Q9NSY2	213 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	EURL	Q9NYK6	297 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	PLCL2	Q9UPR0	1127 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	IKBKG	Q9Y6K9	419 aa		9.44	□□□□□ -0.9
CALD1-223	ENST00000496024	CCDC88C	Q9P219	2028 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024		A0A0J9YVX5	310 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	EXOC1L	A0A1B0GW35	172 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	HMX2	A2RU54	273 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024		E7EQ34	232 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	EFS	O43281	561 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	RIPK2	O43353	540 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	ZNF749	O43361	778 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	CPNE3	O75131	537 aa	Known RBP	9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	KATNA1	O75449	491 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	CCNDBP1	O95273	360 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	EIF2S1	P05198	315 aa	Known RBP	9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	LIF	P15018	202 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	WT1	P19544	449 aa	Predicted RBP	9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	CRABP2	P29373	138 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	DLST	P36957	453 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	GABRA4	P48169	554 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	AP1S2	P56377	157 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	TMPRSS3	P57727	454 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	VSX2	P58304	361 aa	Predicted RBP	9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	PRDX1	Q06830	199 aa	Known RBP	9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	GPS2	Q13227	327 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	PTCHD3	Q3KNS1	767 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	ZC3H12B	Q5HYM0	836 aa	Known RBP	9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	PRAMEF13	Q5VWM6	474 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	TRMT10C	Q7L0Y3	403 aa	Known RBP	9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	ADAMTSL2	Q86TH1	951 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	TBC1D1	Q86TI0	1168 aa	Predicted RBP	9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	PLD3	Q8IV08	490 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	LRRC56	Q8IYG6	542 aa	Predicted RBP	9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	ESX1	Q8N693	406 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	ZNF655	Q8N720	491 aa	Predicted RBP	9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	SLC38A9	Q8NBW4	561 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	SLC44A1	Q8WWI5	657 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	MR1	Q95460	341 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	ZUFSP	Q96AP4	578 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	KIAA1143	Q96AT1	154 aa	Predicted RBP	9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	SELENOS	Q9BQE4	189 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	DERL2	Q9GZP9	239 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	ANKZF1	Q9H8Y5	726 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	GPN2	Q9H9Y4	310 aa	Predicted RBP	9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	SNX15	Q9NRS6	342 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	CUEDC1	Q9NWM3	386 aa	Predicted RBP	9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	TLK1	Q9UKI8	766 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	PADI1	Q9ULC6	663 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	LHX6	Q9UPM6	363 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	CHD6	Q8TD26	2715 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	FER1L5	A0AVI2	2057 aa		9.43	□□□□□ -0.9
CALD1-223	ENST00000496024	LOC105369274	A0A096LPK9	316 aa		9.42	□□□□□ -0.9
CALD1-223	ENST00000496024	IGKV1-8	A0A0C4DH67	115 aa		9.42	□□□□□ -0.9
CALD1-223	ENST00000496024	LOC102723532	A0A0G2JNH3	316 aa		9.42	□□□□□ -0.9
CALD1-223	ENST00000496024	OR2A25	A4D2G3	310 aa		9.42	□□□□□ -0.9
CALD1-223	ENST00000496024	TARM1	B6A8C7	271 aa		9.42	□□□□□ -0.9
CALD1-223	ENST00000496024		H7BY64	318 aa		9.42	□□□□□ -0.9
CALD1-223	ENST00000496024	ZSCAN9	O15535	394 aa	Predicted RBP	9.42	□□□□□ -0.9
CALD1-223	ENST00000496024	FKBP9	O95302	570 aa		9.42	□□□□□ -0.9
CALD1-223	ENST00000496024	WISP3	O95389	354 aa	Predicted RBP	9.42	□□□□□ -0.9
CALD1-223	ENST00000496024	STATH	P02808	62 aa		9.42	□□□□□ -0.9
CALD1-223	ENST00000496024	MT-ND3	P03897	115 aa		9.42	□□□□□ -0.9
CALD1-223	ENST00000496024	C2	P06681	752 aa		9.42	□□□□□ -0.9
CALD1-223	ENST00000496024	ANXA5	P08758	320 aa		9.42	□□□□□ -0.9
CALD1-223	ENST00000496024	ENO2	P09104	434 aa	Predicted RBP	9.42	□□□□□ -0.9
CALD1-223	ENST00000496024	MSL3P1	P0C860	447 aa		9.42	□□□□□ -0.9
CALD1-223	ENST00000496024	SLC35E2B	P0CK96	405 aa		9.42	□□□□□ -0.9
CALD1-223	ENST00000496024	CDH1	P12830	882 aa		9.42	□□□□□ -0.9
CALD1-223	ENST00000496024	CD1D	P15813	335 aa		9.42	□□□□□ -0.9
CALD1-223	ENST00000496024	TFEB	P19484	476 aa		9.42	□□□□□ -0.9
CALD1-223	ENST00000496024	TCN2	P20062	427 aa		9.42	□□□□□ -0.9
CALD1-223	ENST00000496024	ALAS2	P22557	587 aa		9.42	□□□□□ -0.9

Retrieved 100 of 20,778 RNA–protein pairs in 41 ms