RNA–Protein interactions for RNA: ENST00000494973.1

APTX-231, Transcript of aprataxin, human

TSL 4

Gene APTX, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-231	ENST00000494973	PARD6A	Q9NPB6	346 aa		13.08	□□□□□ -0.32
APTX-231	ENST00000494973	SEMA4B	Q9NPR2	832 aa	Predicted RBP	13.08	□□□□□ -0.32
APTX-231	ENST00000494973	ACTR10	Q9NZ32	417 aa		13.08	□□□□□ -0.32
APTX-231	ENST00000494973	CIDEB	Q9UHD4	219 aa		13.08	□□□□□ -0.32
APTX-231	ENST00000494973	TRPS1	Q9UHF7	1281 aa		13.08	□□□□□ -0.32
APTX-231	ENST00000494973	POMT2	Q9UKY4	750 aa		13.08	□□□□□ -0.32
APTX-231	ENST00000494973	RAP2C	Q9Y3L5	183 aa		13.08	□□□□□ -0.32
APTX-231	ENST00000494973	IGHV1OR21-1	A0A087WYE8	117 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	CPED1	A4D0V7	1026 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	SNN	O75324	88 aa	Predicted RBP	13.07	□□□□□ -0.32
APTX-231	ENST00000494973	CLDN9	O95484	217 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	ESRRB	O95718	433 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	NPPB	P16860	134 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	ACP1	P24666	158 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	SERPINB1	P30740	379 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	CASP2	P42575	452 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	GDF5	P43026	501 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	CCR8	P51685	355 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	PHEX	P78562	749 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	ZNF33B	Q06732	778 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	SQSTM1	Q13501	440 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	FASTK	Q14296	549 aa	Known RBP	13.07	□□□□□ -0.32
APTX-231	ENST00000494973	SF1	Q15637	639 aa	Known RBP	13.07	□□□□□ -0.32
APTX-231	ENST00000494973	ATG9B	Q674R7	924 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	WDR74	Q6RFH5	385 aa	Predicted RBP	13.07	□□□□□ -0.32
APTX-231	ENST00000494973	SPESP1	Q6UW49	350 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	SUSD1	Q6UWL2	747 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	ZCCHC23	Q6ZST2	131 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	SPRED1	Q7Z699	444 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	KRT78	Q8N1N4	520 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	PPFIBP2	Q8ND30	876 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	OR2L3	Q8NG85	312 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	TRPC4AP	Q8TEL6	797 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	WDR34	Q96EX3	536 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	PTCD3	Q96EY7	689 aa	Known RBP	13.07	□□□□□ -0.32
APTX-231	ENST00000494973	SEC16B	Q96JE7	1060 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	CCT7	Q99832	543 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	AIF1L	Q9BQI0	150 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	SIKE1	Q9BRV8	207 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	TBC1D10A	Q9BXI6	508 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	CAAP1	Q9H8G2	361 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	HAO1	Q9UJM8	370 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	SNX7	Q9UNH6	387 aa		13.07	□□□□□ -0.32
APTX-231	ENST00000494973	PRAMEF33	A0A0G2JMD5	474 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973		A0A0J9YY10	115 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973		A0A1W2PPV9	198 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	TLCD2	A6NGC4	264 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	C4orf47	A7E2U8	309 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	BTN3A3	O00478	584 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	TOX3	O15405	576 aa	Predicted RBP	13.06	□□□□□ -0.32
APTX-231	ENST00000494973	TNFSF14	O43557	240 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	PRICKLE3	O43900	615 aa	Predicted RBP	13.06	□□□□□ -0.32
APTX-231	ENST00000494973	CD59	P13987	128 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	UGT2B7	P16662	529 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	POLR2C	P19387	275 aa	Predicted RBP	13.06	□□□□□ -0.32
APTX-231	ENST00000494973	TGM1	P22735	817 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	ALDH4A1	P30038	563 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	CDH13	P55290	713 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	GNGT1	P63211	74 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	OCRL	Q01968	901 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	RELA	Q04206	551 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	E2F2	Q14209	437 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	C18orf21	Q32NC0	220 aa	Predicted RBP	13.06	□□□□□ -0.32
APTX-231	ENST00000494973	XKR6	Q5GH73	641 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	ARL13A	Q5H913	290 aa	Predicted RBP	13.06	□□□□□ -0.32
APTX-231	ENST00000494973	STPG1	Q5TH74	334 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	GRHL2	Q6ISB3	625 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	GUSBP11	Q6P575	273 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	MILR1	Q7Z6M3	343 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	TMPRSS11B	Q86T26	416 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	CUZD1	Q86UP6	607 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	KMT5C	Q86Y97	462 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	WDR75	Q8IWA0	830 aa	Known RBP	13.06	□□□□□ -0.32
APTX-231	ENST00000494973	SFTPA2	Q8IWL1	248 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	L3MBTL4	Q8NA19	623 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	ABHD11	Q8NFV4	315 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	TTL	Q8NG68	377 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	OR2A1	Q8NGT9	310 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	IFI44	Q8TCB0	444 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	AGAP11	Q8TF27	550 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	NEIL2	Q969S2	332 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	ZUFSP	Q96AP4	578 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	ESAM	Q96AP7	390 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	CHMP6	Q96FZ7	201 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	PITPNM3	Q9BZ71	974 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	MID1IP1	Q9NPA3	183 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	C1GALT1	Q9NS00	363 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	ABCF3	Q9NUQ8	709 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	TMEM184C	Q9NVA4	438 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	VTI1B	Q9UEU0	232 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	ADGRE2	Q9UHX3	823 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	SNX6	Q9UNH7	406 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	PCDHGA11	Q9Y5H2	935 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	KLK4	Q9Y5K2	254 aa		13.06	□□□□□ -0.32
APTX-231	ENST00000494973	MN1	Q10571	1320 aa	Predicted RBP	13.06	□□□□□ -0.32
APTX-231	ENST00000494973	LY6G6E	A0A0G2JKS1	128 aa		13.05	□□□□□ -0.32
APTX-231	ENST00000494973	KRT87P	A6NCN2	255 aa		13.05	□□□□□ -0.32
APTX-231	ENST00000494973	TCP11X1	B4DZS4	312 aa		13.05	□□□□□ -0.32
APTX-231	ENST00000494973	CPNE6	O95741	557 aa		13.05	□□□□□ -0.32
APTX-231	ENST00000494973	KRT6A	P02538	564 aa		13.05	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms