RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 PLD3Q8IV08 490 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 LRRC56Q8IYG6 542 aaPredicted RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 UBQLNLQ8IYU4 475 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 FAM89BQ8N5H3 189 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 LRRC17Q8N6Y2 441 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 STKLD1Q8NE28 680 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 ARNTL2Q8WYA1 636 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 AKAP1Q92667 903 aaKnown RBP eCLIP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 P3H4Q92791 437 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 SLCO2A1Q92959 643 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 MYDGFQ969H8 173 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 MTERF3Q96E29 417 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 MISP3Q96FF7 219 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 LCORQ96JN0 433 aaPredicted RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 C9orf72Q96LT7 481 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 PNMA5Q96PV4 448 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 ZSCAN10Q96SZ4 725 aaPredicted RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 DUSP26Q9BV47 211 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 CEP41Q9BYV8 373 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 MINDY3Q9H8M7 445 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 BRD7Q9NPI1 651 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 SLC6A13Q9NSD5 602 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 UFSP2Q9NUQ7 469 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 MRPL22Q9NWU5 206 aaKnown RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 CNOT2Q9NZN8 540 aaKnown RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 SLC17A7Q9P2U7 560 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 TJP2Q9UDY2 1190 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 PISDQ9UG56 409 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 GDF2Q9UK05 429 aaPredicted RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 MKLN1Q9UL63 735 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 PCDHA12Q9UN75 941 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 SLC6A14Q9UN76 642 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 CNTN6Q9UQ52 1028 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 CDYLQ9Y232 598 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 GDAQ9Y2T3 454 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 NEU2Q9Y3R4 380 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 DYRK1BQ9Y463 629 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 NCAPD3P42695 1498 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 LRPPRCP42704 1394 aaKnown RBP4.09□□□□□ -1.75
BRCA1-220ENST00000492859 MTUS2Q5JR59 1369 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 UTYO14607 1347 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 XDHP47989 1333 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 SPATA31A1Q5TZJ5 1347 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 TMEM191CA6NGB0 347 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 GAGE10A6NGK3 116 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 FAM90A7PA6NKC0 464 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 ZNF729A6NN14 1252 aaPredicted RBP4.09□□□□□ -1.75
BRCA1-220ENST00000492859 ERI2A8K979 691 aaKnown RBP4.09□□□□□ -1.75
BRCA1-220ENST00000492859 FAM90A22PA8MWA6 464 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 FAM90A12PA8MX19 464 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 FAM90A23PA8MXZ1 464 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 ZNF213O14771 459 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 GSTA4O15217 222 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 MMP20O60882 483 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 HSF2BPO75031 334 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 STX11O75558 287 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 WDR47O94967 919 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 NXPH2O95156 264 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 APOC1P02654 83 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 AMY2AP04746 511 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 RLN1P04808 185 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 CALB1P05937 261 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 THBDP07204 575 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 LYNP07948 512 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 PLEKP08567 350 aaPredicted RBP4.09□□□□□ -1.75
BRCA1-220ENST00000492859 ANXA4P09525 319 aaPredicted RBP4.09□□□□□ -1.75
BRCA1-220ENST00000492859 TMEM191BP0C7N4 346 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 TRIM49P0CI25 452 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 TRIM49CP0CI26 452 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 GIMD1P0DJR0 217 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 CEACAM1P13688 526 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 ITGB5P18084 799 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 AMY2BP19961 511 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 PRKCHP24723 683 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 IL1R2P27930 398 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 CD6P30203 668 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 BDKRB2P30411 391 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 HOXC9P31274 260 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 SLC1A2P43004 574 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 GPD2P43304 727 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 MAGEB1P43366 347 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 KCNJ3P48549 501 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 PNLIPRP2P54317 469 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 PRKAG1P54619 331 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 ARSFP54793 590 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 SOX8P57073 446 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 MRPS25P82663 173 aaKnown RBP4.09□□□□□ -1.75
BRCA1-220ENST00000492859 ZNF200P98182 395 aaPredicted RBP4.09□□□□□ -1.75
BRCA1-220ENST00000492859 CNTN2Q02246 1040 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 BDH1Q02338 343 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 SLC3A1Q07837 685 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 DMWDQ09019 674 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 CSHL1Q14406 222 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 ADRM1Q16186 407 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 SNAPC1Q16533 368 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 STX1AQ16623 288 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 IQCCQ4KMZ1 466 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 TMEM35AQ53FP2 167 aa4.09□□□□□ -1.75
BRCA1-220ENST00000492859 KLHL22Q53GT1 634 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms