RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 USP45Q70EL2 814 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 FIBINQ8TAL6 211 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 TESCQ96BS2 214 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 MYOCQ99972 504 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 REXO4Q9GZR2 422 aaKnown RBP17.44■□□□□ 0.38
VIM-206ENST00000487938 ZNF106Q9H2Y7 1883 aaKnown RBP17.44■□□□□ 0.38
VIM-206ENST00000487938 RAD21L1Q9H4I0 556 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 ERVK-11Q9UQG0 969 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 PABPN1LA6NDY0 278 aaKnown RBP17.43■□□□□ 0.38
VIM-206ENST00000487938 EVPLLA8MZ36 301 aa17.43■□□□□ 0.38
VIM-206ENST00000487938 CLIC1O00299 241 aa17.43■□□□□ 0.38
VIM-206ENST00000487938 FPGTO14772 594 aa17.43■□□□□ 0.38
VIM-206ENST00000487938 SLC16A6O15403 523 aa17.43■□□□□ 0.38
VIM-206ENST00000487938 SH3BGRLO75368 114 aa17.43■□□□□ 0.38
VIM-206ENST00000487938 CLPXO76031 633 aa17.43■□□□□ 0.38
VIM-206ENST00000487938 PARNO95453 639 aaKnown RBP17.43■□□□□ 0.38
VIM-206ENST00000487938 CPSF4O95639 269 aaKnown RBP17.43■□□□□ 0.38
VIM-206ENST00000487938 ENGP17813 658 aa17.43■□□□□ 0.38
VIM-206ENST00000487938 RYKP34925 604 aa17.43■□□□□ 0.38
VIM-206ENST00000487938 KIR3DL1P43629 444 aa17.43■□□□□ 0.38
VIM-206ENST00000487938 DAPP51397 102 aa17.43■□□□□ 0.38
VIM-206ENST00000487938 GP2P55259 537 aaKnown RBP17.43■□□□□ 0.38
VIM-206ENST00000487938 FRG2Q64ET8 278 aa17.43■□□□□ 0.38
VIM-206ENST00000487938 SHQ1Q6PI26 577 aaKnown RBP17.43■□□□□ 0.38
VIM-206ENST00000487938 PIWIL3Q7Z3Z3 882 aaKnown RBP17.43■□□□□ 0.38
VIM-206ENST00000487938 VTCN1Q7Z7D3 282 aa17.43■□□□□ 0.38
VIM-206ENST00000487938 L3MBTL4Q8NA19 623 aa17.43■□□□□ 0.38
VIM-206ENST00000487938 FRG2BQ96QU4 278 aa17.43■□□□□ 0.38
VIM-206ENST00000487938 PANX1Q96RD7 426 aa17.43■□□□□ 0.38
VIM-206ENST00000487938 DPH2Q9BQC3 489 aaPredicted RBP17.43■□□□□ 0.38
VIM-206ENST00000487938 ERVK-18Q9QC07 812 aa17.43■□□□□ 0.38
VIM-206ENST00000487938 PLXNB3Q9ULL4 1909 aa17.43■□□□□ 0.38
VIM-206ENST00000487938 A0A1W2PQ67 120 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 CCNDBP1O95273 360 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 C8GP07360 202 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 EMX1Q04741 257 aaPredicted RBP17.42■□□□□ 0.38
VIM-206ENST00000487938 GGTA1PQ4G0N0 100 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 DPY19L3Q6ZPD9 716 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 TCEAL8Q8IYN2 117 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 MYLIPQ8WY64 445 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 DNAJC11Q9NVH1 559 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 SLCO3A1Q9UIG8 710 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 SAMD4AQ9UPU9 718 aaKnown RBP17.42■□□□□ 0.38
VIM-206ENST00000487938 NDUFS2O75306 463 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 ANGPTL1O95841 491 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 ATP1B2P14415 290 aaPredicted RBP17.42■□□□□ 0.38
VIM-206ENST00000487938 IL1RNP18510 177 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 MAPK1P28482 360 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 CLK3P49761 638 aaKnown RBP17.42■□□□□ 0.38
VIM-206ENST00000487938 PTPN5P54829 565 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 ATP1A4Q13733 1029 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 DDX39BQ13838 428 aaKnown RBP17.42■□□□□ 0.38
VIM-206ENST00000487938 NR1D2Q14995 579 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 CDKL4Q5MAI5 379 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 ZNF648Q5T619 568 aaPredicted RBP17.42■□□□□ 0.38
VIM-206ENST00000487938 OR2T5Q6IEZ7 315 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 HTR3DQ70Z44 454 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 SYT12Q8IV01 421 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 CLECL1Q8IZS7 167 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 PIK3C3Q8NEB9 887 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 OR2T29Q8NH02 315 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 MTERF1Q99551 399 aaKnown RBP17.42■□□□□ 0.38
VIM-206ENST00000487938 TRIT1Q9H3H1 467 aaKnown RBP17.42■□□□□ 0.38
VIM-206ENST00000487938 BRD9Q9H8M2 597 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 B4GALT6Q9UBX8 382 aa17.42■□□□□ 0.38
VIM-206ENST00000487938 KCNK5O95279 499 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 HLA-FP30511 346 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 MAGEA2P43356 314 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 MAP2K4P45985 399 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 SPINT3P49223 89 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 PFN3P60673 137 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 UGT8Q16880 541 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 DUOXA1Q1HG43 343 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 LAIR1Q6GTX8 287 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 PARP8Q8N3A8 854 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 TCAIMQ8N3R3 496 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 CHST14Q8NCH0 376 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 MCOLN3Q8TDD5 553 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 NELL1Q92832 810 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 SCAMP4Q969E2 229 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 ECHDC3Q96DC8 303 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 COX4I2Q96KJ9 171 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 IL1RAPQ9NPH3 570 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 VPS4AQ9UN37 437 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 MYOFQ9NZM1 2061 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 IGLV3-16A0A075B6K0 115 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 ZNF99A8MXY4 864 aaPredicted RBP17.41■□□□□ 0.38
VIM-206ENST00000487938 YY2O15391 372 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 NUAK1O60285 661 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 URODP06132 367 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 ITIH1P19827 911 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 PRPH2P23942 346 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 HNMTP50135 292 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 VLDLRP98155 873 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 ITGADQ13349 1161 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 RFX4Q33E94 735 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 C22orf39Q6P5X5 142 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 DCDC5Q6ZRR9 648 aa17.41■□□□□ 0.38
VIM-206ENST00000487938 FAM43BQ6ZT52 329 aaPredicted RBP17.41■□□□□ 0.38
VIM-206ENST00000487938 ABHD11Q8NFV4 315 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms