RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 MOGQ16653 247 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 DEFB115Q30KQ5 88 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 SH3D19Q5HYK7 790 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 MGME1Q9BQP7 344 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 SCML2Q9UQR0 700 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 E7ESA3 106 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 PDCD5O14737 125 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 PRAMEF12O95522 483 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 HSD17B2P37059 387 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 CBX5P45973 191 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 C1QTNF8P60827 252 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 TUBA1BP68363 451 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 EMX2Q04743 252 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 TPRG1LQ5T0D9 272 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 TUBA1AQ71U36 451 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 NUDT13Q86X67 352 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 COX18Q8N8Q8 333 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 COMMD4Q9H0A8 199 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 RPF2Q9H7B2 306 aaKnown RBP16.05■□□□□ 0.16
COL7A1-210ENST00000487017 RIMKLBQ9ULI2 386 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 SERPINA3P01011 423 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 ALAS2P22557 587 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 DDX6P26196 483 aaKnown RBP eCLIP16.04■□□□□ 0.16
COL7A1-210ENST00000487017 ZFAND2BQ8WV99 257 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 KCNA7Q96RP8 456 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 CCSER2Q9H7U1 834 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 CTPS2Q9NRF8 586 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 KCTD3Q9Y597 815 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 A0A0X1KG70 313 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 LOC730098B7Z3J9 87 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 OPN1SWP03999 348 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 TUBA3CQ13748 450 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 C1orf52Q8N6N3 182 aaKnown RBP16.04■□□□□ 0.16
COL7A1-210ENST00000487017 TBC1D24Q9ULP9 559 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 BHMG1C9JSJ3 638 aaPredicted RBP16.04■□□□□ 0.16
COL7A1-210ENST00000487017 NRP1O14786 923 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 ABCB7O75027 752 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 CPN2P22792 545 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 ECHS1P30084 290 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 SLC6A4P31645 630 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 SMOQ99835 787 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 ITM2CQ9NQX7 267 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 SLC22A14Q9Y267 594 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 ZNF432O94892 652 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 JAG1P78504 1218 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 ABHD18Q0P651 414 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 PPP1R8Q12972 351 aaKnown RBP16.04■□□□□ 0.16
COL7A1-210ENST00000487017 C10orf71Q711Q0 1435 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 RAB11FIP5Q9BXF6 653 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 MRPS30Q9NP92 439 aaKnown RBP16.04■□□□□ 0.16
COL7A1-210ENST00000487017 ANKRD66B4E2M5 251 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 B3GALT2O43825 422 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 TGFB1P01137 390 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 GSTT2BP0CG30 244 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 VBP1P61758 197 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 TPGS2Q68CL5 300 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 AMZ2Q86W34 360 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 HSPBAP1Q96EW2 488 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 RBM18Q96H35 190 aaKnown RBP16.04■□□□□ 0.16
COL7A1-210ENST00000487017 C12orf66Q96MD2 445 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 COL21A1Q96P44 957 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 POPDC3Q9HBV1 291 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 ZCCHC3Q9NUD5 404 aaKnown RBP16.04■□□□□ 0.16
COL7A1-210ENST00000487017 P2RX2Q9UBL9 471 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 UPB1Q9UBR1 384 aa16.04■□□□□ 0.16
COL7A1-210ENST00000487017 CSTF1Q05048 431 aaKnown RBP16.03■□□□□ 0.16
COL7A1-210ENST00000487017 SIAH1Q8IUQ4 282 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 ZFP3Q96NJ6 502 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 IL4I1Q96RQ9 567 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 SMURF2Q9HAU4 748 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 MKS1Q9NXB0 559 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 LRRC72A6NJI9 287 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 ANXA2P2A6NMY6 339 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 J3QRK9 145 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 ANXA2P07355 339 aaKnown RBP16.03■□□□□ 0.16
COL7A1-210ENST00000487017 SLC2A2P11168 524 aaPredicted RBP16.03■□□□□ 0.16
COL7A1-210ENST00000487017 AVPR1BP47901 424 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 CCR8P51685 355 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 MC1RQ01726 317 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 MEP1AQ16819 746 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 SWI5Q1ZZU3 235 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 TRIM74Q86UV6 250 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 TRIM73Q86UV7 250 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 TXNDC5Q8NBS9 432 aaKnown RBP16.03■□□□□ 0.16
COL7A1-210ENST00000487017 CHST4Q8NCG5 386 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 TTLQ8NG68 377 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 OR5AK3PQ8NH89 298 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 FBXL8Q96CD0 374 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 MAPKAP1Q9BPZ7 522 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 TOR3AQ9H497 397 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 GKN1Q9NS71 199 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 GRIP1Q9Y3R0 1128 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 TRBC2A0A5B9 178 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 WNT9AO14904 365 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 SCAMP1O15126 338 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 CLPXO76031 633 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 INMTO95050 263 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 EBLN1P0CF75 366 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 ZNF829Q3KNS6 432 aaPredicted RBP16.03■□□□□ 0.16
COL7A1-210ENST00000487017 GDPD4Q6W3E5 623 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms