RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ATXN8OSP0DMR3 200 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 STMN1P16949 149 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 WT1P19544 449 aaPredicted RBP14.18□□□□□ -0.14
USP4-212ENST00000486549 STAT5AP42229 794 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 GABRA4P48169 554 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 TBPL1P62380 186 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 ABHD18Q0P651 414 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 BMPR2Q13873 1038 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 MAP7Q14244 749 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 ICE2Q659A1 982 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 AGTRAPQ6RW13 159 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 RELL1Q8IUW5 271 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 GSPT2Q8IYD1 628 aaKnown RBP14.18□□□□□ -0.14
USP4-212ENST00000486549 LRRC56Q8IYG6 542 aaPredicted RBP14.18□□□□□ -0.14
USP4-212ENST00000486549 SPATA6LQ8N4H0 392 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 DNAJC22Q8N4W6 341 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 UHMK1Q8TAS1 419 aaKnown RBP14.18□□□□□ -0.14
USP4-212ENST00000486549 KIAA1143Q96AT1 154 aaPredicted RBP14.18□□□□□ -0.14
USP4-212ENST00000486549 CLIP3Q96DZ5 547 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 PDLIM5Q96HC4 596 aaKnown RBP14.18□□□□□ -0.14
USP4-212ENST00000486549 DPH7Q9BTV6 452 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 TRIM54Q9BYV2 358 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 CHRNA10Q9GZZ6 450 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 SPRTNQ9H040 489 aaPredicted RBP14.18□□□□□ -0.14
USP4-212ENST00000486549 ACSS3Q9H6R3 686 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 ACTR5Q9H9F9 607 aaPredicted RBP14.18□□□□□ -0.14
USP4-212ENST00000486549 POPDC3Q9HBV1 291 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 CCDC177Q9NQR7 707 aaPredicted RBP14.18□□□□□ -0.14
USP4-212ENST00000486549 CTNNAL1Q9UBT7 734 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 HEATR5BQ9P2D3 2071 aa14.18□□□□□ -0.14
USP4-212ENST00000486549 IGSF10Q6WRI0 2623 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 ATRXP46100 2492 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 A0A0J9YVX5 310 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 ZNF749O43361 778 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 ZNF500O60304 480 aaPredicted RBP14.17□□□□□ -0.14
USP4-212ENST00000486549 CCNDBP1O95273 360 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 DLSTP36957 453 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 GMPRP36959 345 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 RAB10P61026 200 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 GPS2Q13227 327 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 NAE1Q13564 534 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 PRAMEF13Q5VWM6 474 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 FAM199XQ6PEV8 388 aaPredicted RBP14.17□□□□□ -0.14
USP4-212ENST00000486549 SBSNQ6UWP8 590 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 RAPH1Q70E73 1250 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 FRA10AC1Q70Z53 315 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 ADCK2Q7Z695 626 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 CMC1Q7Z7K0 106 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 MCATQ8IVS2 390 aaKnown RBP14.17□□□□□ -0.14
USP4-212ENST00000486549 ZNF655Q8N720 491 aaPredicted RBP14.17□□□□□ -0.14
USP4-212ENST00000486549 SLC38A9Q8NBW4 561 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 MR1Q95460 341 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 ZUFSPQ96AP4 578 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 AKIRIN1Q9H9L7 192 aaPredicted RBP14.17□□□□□ -0.14
USP4-212ENST00000486549 LHX9Q9NQ69 397 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 EURLQ9NYK6 297 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 CROTQ9UKG9 612 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 PCDHB3Q9Y5E6 796 aa14.17□□□□□ -0.14
USP4-212ENST00000486549 ESPNB1AK53 854 aa14.16□□□□□ -0.14
USP4-212ENST00000486549 TARM1B6A8C7 271 aa14.16□□□□□ -0.14
USP4-212ENST00000486549 ZSCAN9O15535 394 aaPredicted RBP14.16□□□□□ -0.14
USP4-212ENST00000486549 CTSVO60911 334 aa14.16□□□□□ -0.14
USP4-212ENST00000486549 ENO2P09104 434 aaPredicted RBP14.16□□□□□ -0.14
USP4-212ENST00000486549 CCDC166P0CW27 439 aa14.16□□□□□ -0.14
USP4-212ENST00000486549 AP1S2P56377 157 aa14.16□□□□□ -0.14
USP4-212ENST00000486549 NAA25Q14CX7 972 aa14.16□□□□□ -0.14
USP4-212ENST00000486549 TSNQ15631 228 aaKnown RBP14.16□□□□□ -0.14
USP4-212ENST00000486549 ZKSCAN8Q15776 578 aaPredicted RBP14.16□□□□□ -0.14
USP4-212ENST00000486549 PPP1R3AQ16821 1122 aa14.16□□□□□ -0.14
USP4-212ENST00000486549 ZC3H12BQ5HYM0 836 aaKnown RBP14.16□□□□□ -0.14
USP4-212ENST00000486549 MROH9Q5TGP6 573 aa14.16□□□□□ -0.14
USP4-212ENST00000486549 CT55Q8WUE5 264 aa14.16□□□□□ -0.14
USP4-212ENST00000486549 PYCR2Q96C36 320 aa14.16□□□□□ -0.14
USP4-212ENST00000486549 BBC3Q96PG8 261 aaPredicted RBP14.16□□□□□ -0.14
USP4-212ENST00000486549 EGFL8Q99944 293 aa14.16□□□□□ -0.14
USP4-212ENST00000486549 SELENOSQ9BQE4 189 aa14.16□□□□□ -0.14
USP4-212ENST00000486549 STARD5Q9NSY2 213 aa14.16□□□□□ -0.14
USP4-212ENST00000486549 CUEDC1Q9NWM3 386 aaPredicted RBP14.16□□□□□ -0.14
USP4-212ENST00000486549 IL17BQ9UHF5 180 aa14.16□□□□□ -0.14
USP4-212ENST00000486549 PADI1Q9ULC6 663 aa14.16□□□□□ -0.14
USP4-212ENST00000486549 PCDHGA4Q9Y5G9 962 aa14.16□□□□□ -0.14
USP4-212ENST00000486549 MRPS18BQ9Y676 258 aaKnown RBP14.16□□□□□ -0.14
USP4-212ENST00000486549 IGKV1-8A0A0C4DH67 115 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 POC1B-GALNT4F8VUJ3 575 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 KATNA1O75449 491 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 WISP3O95389 354 aaPredicted RBP14.15□□□□□ -0.14
USP4-212ENST00000486549 ITGB2P05107 769 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 EIF2S1P05198 315 aaKnown RBP14.15□□□□□ -0.14
USP4-212ENST00000486549 KLK3P07288 261 aaPredicted RBP14.15□□□□□ -0.14
USP4-212ENST00000486549 FAM153BP0C7A2 387 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 TCN2P20062 427 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 VSX2P58304 361 aaPredicted RBP14.15□□□□□ -0.14
USP4-212ENST00000486549 CYP4F2P78329 520 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 ABATP80404 500 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 PRDX1Q06830 199 aaKnown RBP14.15□□□□□ -0.14
USP4-212ENST00000486549 CSHL1Q14406 222 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 PTCHD3Q3KNS1 767 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 FAM153CQ494X1 144 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 C1orf189Q5VU69 101 aa14.15□□□□□ -0.14
USP4-212ENST00000486549 FRMPD2BQ6IN97 320 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms