RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 ACSBG2Q5FVE4 666 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 TEDDM1Q5T9Z0 273 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 PRAMEF17Q5VTA0 474 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 STEAP4Q687X5 459 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 ZNF470Q6ECI4 717 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 FBXO42Q6P3S6 717 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 ATG14Q6ZNE5 492 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 OVCH1Q7RTY7 1134 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 MAATS1Q7Z4T9 603 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 TRIM73Q86UV7 250 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 LRRC56Q8IYG6 542 aaPredicted RBP6.72□□□□□ -1.33
VPS50-218ENST00000485994 OTUD6BQ8N6M0 293 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 BBOF1Q8ND07 529 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 OR2L3Q8NG85 312 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 C9orf43Q8TAL5 461 aaPredicted RBP6.72□□□□□ -1.33
VPS50-218ENST00000485994 CD200R1Q8TD46 325 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 SMPDL3AQ92484 453 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 ANKRD7Q92527 254 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 PDLIM5Q96HC4 596 aaKnown RBP6.72□□□□□ -1.33
VPS50-218ENST00000485994 IL17FQ96PD4 163 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 SLC30A3Q99726 388 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 TRIM56Q9BRZ2 755 aaKnown RBP6.72□□□□□ -1.33
VPS50-218ENST00000485994 SLC7A5P2Q9GIP4 190 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 PLAC1Q9HBJ0 212 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 UTP6Q9NYH9 597 aaKnown RBP6.72□□□□□ -1.33
VPS50-218ENST00000485994 TAS2R13Q9NYV9 303 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 MOCS1Q9NZB8 636 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.72□□□□□ -1.33
VPS50-218ENST00000485994 ASIC3Q9UHC3 531 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 PYCARDQ9ULZ3 195 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 PLAGL1Q9UM63 463 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 MAD1L1Q9Y6D9 718 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 TEX264Q9Y6I9 313 aa6.72□□□□□ -1.33
VPS50-218ENST00000485994 PRRC2CQ9Y520 2896 aaKnown RBP6.72□□□□□ -1.33
VPS50-218ENST00000485994 KCNE1BA0A087WTH5 132 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 CDC14CA4D256 554 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 ARHGEF33A8MVX0 844 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 C9J4A7 227 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 DSCR3O14972 297 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 EIF3HO15372 352 aaKnown RBP eCLIP6.71□□□□□ -1.34
VPS50-218ENST00000485994 CTSVO60911 334 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 VPS26AO75436 327 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 RFPL1O75677 317 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 SEC31AO94979 1220 aaKnown RBP6.71□□□□□ -1.34
VPS50-218ENST00000485994 CCNDBP1O95273 360 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 CMPK1P30085 196 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 CASRP41180 1078 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 RGS4P49798 205 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 TERF1P54274 439 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 PNLIPRP1P54315 467 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 RRADP55042 308 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 ARL4CP56559 192 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 ETF1P62495 437 aaKnown RBP6.71□□□□□ -1.34
VPS50-218ENST00000485994 NFATC3Q12968 1075 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 GRM7Q14831 915 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 NCF4Q15080 339 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 CCSMST1Q4G0I0 132 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 NKAIN1Q4KMZ8 207 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 ATP1A1-AS1Q5TC04 95 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 GARNL3Q5VVW2 1013 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 CNSTQ6PJW8 725 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 FAM198BQ6UWH4 519 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 RNF44Q7L0R7 432 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 ZNF572Q7Z3I7 529 aaPredicted RBP6.71□□□□□ -1.34
VPS50-218ENST00000485994 IGDCC3Q8IVU1 814 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 ZNF655Q8N720 491 aaPredicted RBP6.71□□□□□ -1.34
VPS50-218ENST00000485994 ENDOVQ8N8Q3 282 aaKnown RBP6.71□□□□□ -1.34
VPS50-218ENST00000485994 OR2Y1Q8NGV0 311 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 GIMAP7Q8NHV1 300 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 MCOLN3Q8TDD5 553 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 SKA2Q8WVK7 121 aaPredicted RBP6.71□□□□□ -1.34
VPS50-218ENST00000485994 FKBP10Q96AY3 582 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 PTERQ96BW5 349 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 MVB12AQ96EY5 273 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 CERS2Q96G23 380 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 SNF8Q96H20 258 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 CCDC138Q96M89 665 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 RUFY1Q96T51 708 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 PKP4Q99569 1192 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 GPR21Q99679 349 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 PLCD4Q9BRC7 762 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 ERP44Q9BS26 406 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 NDC1Q9BTX1 674 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 SARGQ9BW04 601 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 FAM129AQ9BZQ8 928 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 PHACTR1Q9C0D0 580 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 KLHL25Q9H0H3 589 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 PCBD2Q9H0N5 130 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 WDR54Q9H977 334 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 PARVBQ9HBI1 364 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 FBXO6Q9NRD1 293 aaPredicted RBP6.71□□□□□ -1.34
VPS50-218ENST00000485994 IARS2Q9NSE4 1012 aaKnown RBP6.71□□□□□ -1.34
VPS50-218ENST00000485994 TXLNGQ9NUQ3 528 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 WHRNQ9P202 907 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 C5AR2Q9P296 337 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 TLK1Q9UKI8 766 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 SNX7Q9UNH6 387 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 MAN2B2Q9Y2E5 1009 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 PADI2Q9Y2J8 665 aa6.71□□□□□ -1.34
VPS50-218ENST00000485994 VWA7Q9Y334 891 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms