RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 SHISA7A6NL88 538 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 PGM3O95394 542 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 PTGER4P35408 488 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 SOX3P41225 446 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 PGFP49763 221 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 TMEM50BP56557 158 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 CD300CQ08708 224 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 CHAF1BQ13112 559 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 WTAPQ15007 396 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 NTRK2Q16620 822 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 LYSMD4Q5XG99 296 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 HPS6Q86YV9 775 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 SLC37A3Q8NCC5 494 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 MCUQ8NE86 351 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 C17orf47Q8NEP4 570 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 PRPF31Q8WWY3 499 aaKnown RBP2.61□□□□□ -1.99
VPS50-216ENST00000484954 SLAMF9Q96A28 289 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 ATXN7L3BQ96GX2 97 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 AGAP4Q96P64 663 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 ABHD1Q96SE0 405 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 ZNF577Q9BSK1 485 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 TDRD1Q9BXT4 1180 aaKnown RBP2.61□□□□□ -1.99
VPS50-216ENST00000484954 TEX12Q9BXU0 123 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 Q9H8V8 135 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 MED20Q9H944 212 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 GIMAP4Q9NUV9 329 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 R4GN57 208 aa2.61□□□□□ -1.99
VPS50-216ENST00000484954 LOC100509620A0A075B734 347 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 A0A1W2PPK0 400 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 A0A1W2PPQ1 181 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 G3V2L1 256 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 CCL24O00175 119 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 ARPC2O15144 300 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 CYP11B2P19099 503 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 EIF2DP41214 584 aaKnown RBP2.6□□□□□ -1.99
VPS50-216ENST00000484954 EPS8Q12929 822 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 CDH18Q13634 790 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 TMEM132DQ14C87 1099 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 SNAPC1Q16533 368 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 C15orf59Q2T9L4 293 aaPredicted RBP2.6□□□□□ -1.99
VPS50-216ENST00000484954 GPR33Q49SQ1 333 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 MCMDC2Q4G0Z9 681 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 CBWD6Q4V339 395 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 CBWD3Q5JTY5 395 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 MFSD12Q6NUT3 480 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 FRRS1Q6ZNA5 592 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 IL17RELQ6ZVW7 336 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 SLC47A2Q86VL8 602 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 POM121L12Q8N7R1 296 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 APPL2Q8NEU8 664 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 CHPT1Q8WUD6 406 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 PTERQ96BW5 349 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 C2orf48Q96LS8 159 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 ZNF830Q96NB3 372 aaPredicted RBP2.6□□□□□ -1.99
VPS50-216ENST00000484954 NKX3-1Q99801 234 aaPredicted RBP2.6□□□□□ -1.99
VPS50-216ENST00000484954 MXD3Q9BW11 206 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 TRPV4Q9HBA0 871 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 NDE1Q9NXR1 346 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 GDE1Q9NZC3 331 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 ZNF510Q9Y2H8 683 aa2.6□□□□□ -1.99
VPS50-216ENST00000484954 A0A087WUV0 522 aaPredicted RBP2.59□□□□□ -1.99
VPS50-216ENST00000484954 TRBV5-5A0A0J9YX44 114 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 TRIM77I1YAP6 450 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 TEX28O15482 410 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 PFKFB1P16118 471 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 RPL35AP18077 110 aaKnown RBP2.59□□□□□ -1.99
VPS50-216ENST00000484954 SAT1P21673 171 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 HLA-FP30511 346 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 ETV5P41161 510 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 MATR3P43243 847 aaKnown RBP eCLIP2.59□□□□□ -1.99
VPS50-216ENST00000484954 TSFMP43897 325 aaKnown RBP2.59□□□□□ -1.99
VPS50-216ENST00000484954 DNA2P51530 1060 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 CLCN4P51793 760 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 CUL4AQ13619 759 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 BAATQ14032 418 aaPredicted RBP2.59□□□□□ -1.99
VPS50-216ENST00000484954 VEZF1Q14119 521 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 SLC25A30Q5SVS4 291 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 C6orf163Q5TEZ5 329 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 ITPRIPL1Q6GPH6 555 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 PRR27Q6MZM9 219 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 GDPGP1Q6ZNW5 385 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 RPAP2Q8IXW5 612 aaPredicted RBP2.59□□□□□ -1.99
VPS50-216ENST00000484954 TAGAPQ8N103 731 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 ABHD12Q8N2K0 398 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 OR4K1Q8NGD4 311 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 ARSGQ96EG1 525 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 PDLIM5Q96HC4 596 aaKnown RBP2.59□□□□□ -1.99
VPS50-216ENST00000484954 RSRC1Q96IZ7 334 aaKnown RBP2.59□□□□□ -1.99
VPS50-216ENST00000484954 FAM71F1Q96KD3 344 aaPredicted RBP2.59□□□□□ -1.99
VPS50-216ENST00000484954 LPAR4Q99677 370 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 NAP1L4Q99733 375 aaKnown RBP2.59□□□□□ -1.99
VPS50-216ENST00000484954 OVOL2Q9BRP0 275 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 PANK3Q9H999 370 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP2.59□□□□□ -1.99
VPS50-216ENST00000484954 TBC1D22BQ9NU19 505 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 OLAHQ9NV23 265 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 HAO2Q9NYQ3 351 aa2.59□□□□□ -1.99
VPS50-216ENST00000484954 THAP10Q9P2Z0 257 aaPredicted RBP2.59□□□□□ -1.99
VPS50-216ENST00000484954 C19orf25Q9UFG5 118 aaPredicted RBP2.59□□□□□ -1.99
VPS50-216ENST00000484954 RARRES3Q9UL19 164 aa2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms