RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 TUBE1Q9UJT0 475 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 MTUS1Q9ULD2 1270 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 KIF20BQ96Q89 1820 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 PPIP5K1Q6PFW1 1433 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 PIK3R4Q99570 1358 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 GIMAP1-GIMAP5A0A087WTJ2 511 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 LOC101059948A0A1B0GTJ6 334 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 FEZF1A0PJY2 475 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 SH2B2O14492 632 aaPredicted RBP5.34□□□□□ -1.55
USP40-213ENST00000483216 ZSCAN12O43309 604 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 ADAM20O43506 726 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 TOMM70O94826 608 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 STARD3NLO95772 234 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 NGFP01138 241 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 DANCRP0C864 163 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 RNF224P0DH78 156 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 MAP2K2P36507 400 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 WNT5AP41221 380 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 SSR1P43307 286 aaKnown RBP5.34□□□□□ -1.55
USP40-213ENST00000483216 TPD52P55327 224 aaPredicted RBP5.34□□□□□ -1.55
USP40-213ENST00000483216 IFI35P80217 286 aaPredicted RBP5.34□□□□□ -1.55
USP40-213ENST00000483216 NCBP1Q09161 790 aaKnown RBP5.34□□□□□ -1.55
USP40-213ENST00000483216 TAF13Q15543 124 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 SNAPC1Q16533 368 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 IQUBQ8NA54 791 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 TSPAN14Q8NG11 270 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 IRGQQ8WZA9 623 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 PTERQ96BW5 349 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 GIMAP5Q96F15 307 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 LAT2Q9GZY6 243 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 DCTPP1Q9H773 170 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 A4GALTQ9NPC4 353 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 TERF2IPQ9NYB0 399 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 B3GAT1Q9P2W7 334 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 CFAP45Q9UL16 551 aa5.34□□□□□ -1.55
USP40-213ENST00000483216 KNDC1Q76NI1 1749 aa5.34□□□□□ -1.56
USP40-213ENST00000483216 NRXN3Q9Y4C0 1643 aa5.34□□□□□ -1.56
USP40-213ENST00000483216 ADGRB2O60241 1585 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 ATP7BP35670 1465 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 CD163L1Q9NR16 1453 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 NPHP3Q7Z494 1330 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 TMCO5BA8MYB1 307 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 HIP1O00291 1037 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 CGAP01215 116 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 IGLV1-44P01699 117 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 CEACAM1P13688 526 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 CA4P22748 312 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 U2AF2P26368 475 aaKnown RBP eCLIP5.33□□□□□ -1.56
USP40-213ENST00000483216 MAGEA9P43362 315 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 LIG4P49917 911 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 PDX1P52945 283 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 DMPKQ09013 629 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 GPR17Q13304 367 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 ITGA9Q13797 1035 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 P2RY6Q15077 328 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 TTC31Q49AM3 519 aaPredicted RBP5.33□□□□□ -1.56
USP40-213ENST00000483216 PRPF39Q86UA1 669 aaKnown RBP5.33□□□□□ -1.56
USP40-213ENST00000483216 ERC1Q8IUD2 1116 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 EFCAB13Q8IY85 973 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 ZNF595Q8IYB9 648 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 ARHGAP24Q8N264 748 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 ZNF843Q8N446 348 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 MAPKAPK5-AS1Q8N8E1 139 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 AVL9Q8NBF6 648 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 ADAD2Q8NCV1 583 aaKnown RBP5.33□□□□□ -1.56
USP40-213ENST00000483216 CTCFLQ8NI51 663 aaPredicted RBP5.33□□□□□ -1.56
USP40-213ENST00000483216 CCDC107Q8WV48 283 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 SLAMF9Q96A28 289 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 DGAT2Q96PD7 388 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 TBC1D17Q9HA65 648 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 ZNF71Q9NQZ8 489 aaPredicted RBP5.33□□□□□ -1.56
USP40-213ENST00000483216 SDR39U1Q9NRG7 319 aaPredicted RBP5.33□□□□□ -1.56
USP40-213ENST00000483216 DPP3Q9NY33 737 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 SMC3Q9UQE7 1217 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 KCNK7Q9Y2U2 307 aa5.33□□□□□ -1.56
USP40-213ENST00000483216 SLCO1B7G3V0H7 640 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 NR5A2O00482 541 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 NTN3O00634 580 aaPredicted RBP5.32□□□□□ -1.56
USP40-213ENST00000483216 POLR3GO15318 223 aaPredicted RBP5.32□□□□□ -1.56
USP40-213ENST00000483216 ABCB1P08183 1280 aaPredicted RBP5.32□□□□□ -1.56
USP40-213ENST00000483216 FAM157CP0CG43 387 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 PSMA5P28066 241 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 B3GALT5-AS1P59052 145 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 UBXN2AP68543 259 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 GTDC1Q4AE62 458 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 HSP90AB3PQ58FF7 597 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 CCDC158Q5M9N0 1113 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 SLC16A9Q7RTY1 509 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 TICAM2Q86XR7 235 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 CCDC50Q8IVM0 306 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 DDHD1Q8NEL9 900 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 CFAP61Q8NHU2 1237 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 FNBP1Q96RU3 617 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 CDK19Q9BWU1 502 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 KLHL4Q9C0H6 718 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 OPA3Q9H6K4 179 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 SERINC1Q9NRX5 453 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 INTS10Q9NVR2 710 aaKnown RBP5.32□□□□□ -1.56
USP40-213ENST00000483216 LRWD1Q9UFC0 647 aa5.32□□□□□ -1.56
USP40-213ENST00000483216 IL17BQ9UHF5 180 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms