RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 CDC16Q13042 620 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 ILKQ13418 452 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 PDK4Q16654 411 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 SLC5A12Q1EHB4 618 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 ICE2Q659A1 982 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 TMEM71Q6P5X7 295 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 WDR74Q6RFH5 385 aaPredicted RBP11.8□□□□□ -0.52
SDC1-206ENST00000482879 SPESP1Q6UW49 350 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 FAM92BQ6ZTR7 304 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 RPS27LQ71UM5 84 aaKnown RBP11.8□□□□□ -0.52
SDC1-206ENST00000482879 GOLGA7Q7Z5G4 137 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 GLRX5Q86SX6 157 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 TRIM73Q86UV7 250 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 C17orf64Q86WR6 236 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 FAM20CQ8IXL6 584 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 OR2L3Q8NG85 312 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 WDR48Q8TAF3 677 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 FLVCR1-AS1Q8TAF5 88 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 FAM76AQ8TAV0 307 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 NSUN5Q96P11 429 aaKnown RBP11.8□□□□□ -0.52
SDC1-206ENST00000482879 GFM1Q96RP9 751 aaKnown RBP11.8□□□□□ -0.52
SDC1-206ENST00000482879 DPYSL5Q9BPU6 564 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 NUDT22Q9BRQ3 303 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 GATA5Q9BWX5 397 aaPredicted RBP11.8□□□□□ -0.52
SDC1-206ENST00000482879 C1QTNF3Q9BXJ4 246 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 CAPS2Q9BXY5 557 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 PITPNM3Q9BZ71 974 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 MRPS30Q9NP92 439 aaKnown RBP11.8□□□□□ -0.52
SDC1-206ENST00000482879 KLHL3Q9UH77 587 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 PCTPQ9UKL6 214 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 POMT2Q9UKY4 750 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 PCDHGA1Q9Y5H4 931 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 KCNE2Q9Y6J6 123 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 KIF26BQ2KJY2 2108 aa11.8□□□□□ -0.52
SDC1-206ENST00000482879 PIEZO1Q92508 2521 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 A0A0J9YY10 115 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 SPAARA0A1B0GVQ0 90 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 NTN3O00634 580 aaPredicted RBP11.79□□□□□ -0.52
SDC1-206ENST00000482879 CLGNO14967 610 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 FKBP9O95302 570 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 SPTBP11277 2137 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 FGF3P11487 239 aaPredicted RBP11.79□□□□□ -0.52
SDC1-206ENST00000482879 HOXB3P14651 431 aaPredicted RBP11.79□□□□□ -0.52
SDC1-206ENST00000482879 TSPAN8P19075 237 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 BGNP21810 368 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 CDH3P22223 829 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 MPSTP25325 297 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 LSSP48449 732 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 YBX1P67809 324 aaKnown RBP11.79□□□□□ -0.52
SDC1-206ENST00000482879 ABATP80404 500 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 CLCQ05315 142 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 SPIDRQ14159 915 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 CHI3L2Q15782 390 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 CLPPQ16740 277 aaPredicted RBP11.79□□□□□ -0.52
SDC1-206ENST00000482879 SNAP47Q5SQN1 464 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 KIAA1614Q5VZ46 1190 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 ZCCHC23Q6ZST2 131 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 ZNF483Q8TF39 744 aaPredicted RBP11.79□□□□□ -0.52
SDC1-206ENST00000482879 DYDC1Q8WWB3 177 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 SLC5A11Q8WWX8 675 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 NEIL2Q969S2 332 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 ATP6V1E2Q96A05 226 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 FAM122AQ96E09 287 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 PPM1MQ96MI6 270 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 CD180Q99467 661 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 MAP3K3Q99759 626 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 NOL11Q9H8H0 719 aaKnown RBP11.79□□□□□ -0.52
SDC1-206ENST00000482879 IPPKQ9H8X2 491 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 SEMA4BQ9NPR2 832 aaPredicted RBP11.79□□□□□ -0.52
SDC1-206ENST00000482879 TOR4AQ9NXH8 423 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 GPRC5BQ9NZH0 403 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 TMEM9Q9P0T7 183 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 SH2B3Q9UQQ2 575 aa11.79□□□□□ -0.52
SDC1-206ENST00000482879 TLCD2A6NGC4 264 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 H7BY64 318 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 KIF1CO43896 1103 aaKnown RBP11.78□□□□□ -0.52
SDC1-206ENST00000482879 H2AFYO75367 372 aaKnown RBP11.78□□□□□ -0.52
SDC1-206ENST00000482879 KATNA1O75449 491 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 RASSF9O75901 435 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 C9P02748 559 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 SERPINE1P05121 402 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 CDH1P12830 882 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 CEACAM1P13688 526 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 PVRP15151 417 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 GNAZP19086 355 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 EPORP19235 508 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 ARL1P40616 181 aaPredicted RBP11.78□□□□□ -0.52
SDC1-206ENST00000482879 CCNG1P51959 295 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 NAA20P61599 178 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 SIM1P81133 766 aaPredicted RBP11.78□□□□□ -0.52
SDC1-206ENST00000482879 RBBP7Q16576 425 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 RSPO4Q2I0M5 234 aaPredicted RBP11.78□□□□□ -0.52
SDC1-206ENST00000482879 CATSPEREQ5SY80 951 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 CACHD1Q5VU97 1274 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 FIGLAQ6QHK4 219 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 NXPE4Q6UWF7 544 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 ZNF574Q6ZN55 896 aaPredicted RBP11.78□□□□□ -0.52
SDC1-206ENST00000482879 FRMD7Q6ZUT3 714 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 TMPRSS9Q7Z410 1059 aa11.78□□□□□ -0.52
SDC1-206ENST00000482879 SLCO6A1Q86UG4 719 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms