RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 ERAL1O75616 437 aaKnown RBP13.18□□□□□ -0.3
USP42-206ENST00000479544 SSTR4P31391 388 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 DUSP28Q4G0W2 176 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 LAPTM4BQ86VI4 370 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 ZNF675Q8TD23 568 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 COL26A1Q96A83 441 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 TEX37Q96LM6 180 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 ASPNQ9BXN1 380 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 NLNQ9BYT8 704 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 ZDHHC6Q9H6R6 413 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 CLCA2Q9UQC9 943 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 PCDHB14Q9Y5E9 798 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 GUCY1B2O75343 617 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 PPP2R1BP30154 601 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 EMP3P54852 163 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 UGT2B15P54855 530 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 PLD1Q13393 1074 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 TMPRSS11BQ86T26 416 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 NETO1Q8TDF5 533 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 OSBPL10Q9BXB5 764 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 TRIT1Q9H3H1 467 aaKnown RBP13.18□□□□□ -0.3
USP42-206ENST00000479544 ENPP5Q9UJA9 477 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 FAM172BPA6NC97 362 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 UBFD1O14562 309 aaKnown RBP13.18□□□□□ -0.3
USP42-206ENST00000479544 CTDSP2O14595 271 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 MAFKO60675 156 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 TBL1XO60907 577 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 MMP3P08254 477 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 NR2F1P10589 423 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 FPR1P21462 350 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 PIGAP37287 484 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 MAPK12P53778 367 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 GPR142Q7Z601 462 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 TRAPPC5Q8IUR0 188 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 RGL4Q8IZJ4 473 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 FAM86B1Q8N7N1 296 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 OR13F1Q8NGS4 319 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 OSGEPL1Q9H4B0 414 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 SGK2Q9HBY8 427 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 IL1RAPQ9NPH3 570 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 FARSBQ9NSD9 589 aaKnown RBP13.18□□□□□ -0.3
USP42-206ENST00000479544 MS4A12Q9NXJ0 267 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 NUDT4Q9NZJ9 180 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 PCDHGB3Q9Y5G1 929 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 TNRC6CQ9HCJ0 1690 aaKnown RBP13.17□□□□□ -0.3
USP42-206ENST00000479544 A0A0D9SEW6 157 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 LCHNA4D1U4 455 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 FADS2P1A8MWK0 482 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 GADD45GO95257 159 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 WARSP23381 471 aaKnown RBP13.17□□□□□ -0.3
USP42-206ENST00000479544 PTGS2P35354 604 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 KCNQ1P51787 676 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 HKDC1Q2TB90 917 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 BTBD16Q32M84 506 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 IQCCQ4KMZ1 466 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 LCN1P1Q5VSP4 162 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 ERICH5Q6P6B1 374 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 CYP2U1Q7Z449 544 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 CLEC14AQ86T13 490 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 KHSRPQ92945 711 aaKnown RBP eCLIP13.17□□□□□ -0.32e-6■□□□□ 8.4
USP42-206ENST00000479544 ARMC5Q96C12 935 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 PLAC1Q9HBJ0 212 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 ARL5CA6NH57 179 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 ZNF701M0R085 212 aaPredicted RBP13.17□□□□□ -0.3
USP42-206ENST00000479544 INSIG1O15503 277 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 SEPT4O43236 478 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 ITGA2P17301 1181 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 RPS3P23396 243 aaKnown RBP eCLIP13.17□□□□□ -0.3
USP42-206ENST00000479544 GHRHRQ02643 423 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 TRIM40Q6P9F5 258 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 USP45Q70EL2 814 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 HMGN2P46Q86SG4 172 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 ENOPH1Q9UHY7 261 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 INTS6Q9UL03 887 aaKnown RBP13.17□□□□□ -0.3
USP42-206ENST00000479544 FZD4Q9ULV1 537 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 SLC22A14Q9Y267 594 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 OAS3Q9Y6K5 1087 aaKnown RBP13.17□□□□□ -0.3
USP42-206ENST00000479544 A0A1B0GUL6 1792 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 TLL1O43897 1013 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 GJB3O75712 270 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 GSRP00390 522 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 SMPD1P17405 629 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 TACR2P21452 398 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 DCP2Q8IU60 420 aaKnown RBP13.17□□□□□ -0.3
USP42-206ENST00000479544 FAM83FQ8NEG4 500 aaPredicted RBP13.17□□□□□ -0.3
USP42-206ENST00000479544 OR4K1Q8NGD4 311 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 NEURL2Q9BR09 285 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 SLC22A4Q9H015 551 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 GKN1Q9NS71 199 aa13.17□□□□□ -0.3
USP42-206ENST00000479544 ZFP37Q9Y6Q3 630 aaPredicted RBP13.17□□□□□ -0.3
USP42-206ENST00000479544 FAM47E-STBD1D6RA91 191 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 ADAMDEC1O15204 470 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 TOXO94900 526 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 RORCP51449 518 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 CCL23P55773 120 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 ERVPABLB-1P60509 514 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 EMX2Q04743 252 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 ARHGAP1Q07960 439 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 C2orf80Q0P641 193 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 ATP13A5Q4VNC0 1218 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms