RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CROTQ9UKG9 612 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 RARRES3Q9UL19 164 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 ZKSCAN5Q9Y2L8 839 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 HEMK1Q9Y5R4 338 aaPredicted RBP6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 RPS6KL1Q9Y6S9 549 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 CCDC162PA2VCL2 907 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 GSAPA4D1B5 854 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 OR51F1A6NGY5 319 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 AP3B1O00203 1094 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 LIN7AO14910 233 aaPredicted RBP6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 ZBTB11O95625 1053 aaPredicted RBP6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 BPNT1O95861 308 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 GOT2P00505 430 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 PF4P02776 101 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 APRTP07741 180 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 OR56A5P0C7T3 313 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 EBLN1P0CF75 366 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 PRSS56P0CW18 603 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 PRKAR1AP10644 381 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 FOLR1P15328 257 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 ZNF28P17035 718 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 POLR2CP19387 275 aaPredicted RBP6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 TCN2P20062 427 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 CDH3P22223 829 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 FOXN2P32314 431 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 DLSTP36957 453 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 PPARGP37231 505 aaPredicted RBP6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 CCR10P46092 362 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 KPNA2P52292 529 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 POLE2P56282 527 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 TUBB4BP68371 445 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 PRAMEP78395 509 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 MVKQ03426 396 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 TUBB2AQ13885 445 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 KCNAB1Q14722 419 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 ZNF658BQ4V348 819 aaPredicted RBP6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 SYTL3Q4VX76 610 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 TSTD2Q5T7W7 516 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 DRICH1Q6PGQ1 229 aaPredicted RBP6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 CERS6Q6ZMG9 384 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 GSTA5Q7RTV2 222 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 LRRC8AQ8IWT6 810 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 CLDN19Q8N6F1 224 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 PPHLN1Q8NEY8 458 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 TRIM58Q8NG06 486 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 OR8K5Q8NH50 307 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 ELMO1Q92556 727 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 PEX13Q92968 403 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 HDAC10Q969S8 669 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 RHOVQ96L33 236 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 SORCS2Q96PQ0 1159 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 JMJD8Q96S16 334 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 TUBB2BQ9BVA1 445 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 TSSK1BQ9BXA7 367 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 C1QTNF3Q9BXJ4 246 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 TFB2MQ9H5Q4 396 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 FANCEQ9HB96 536 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 CASS4Q9NQ75 786 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 EIF2B3Q9NR50 452 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 FGF21Q9NSA1 209 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 HOMER3Q9NSC5 361 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 STARD5Q9NSY2 213 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 GEMIN8Q9NWZ8 242 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 SOHLH2Q9NX45 425 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 IL17BQ9UHF5 180 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 TUBD1Q9UJT1 453 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 KCND3Q9UK17 655 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 POMT2Q9UKY4 750 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 PADI1Q9ULC6 663 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 RIMKLBQ9ULI2 386 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 DRG1Q9Y295 367 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 SEC16AO15027 2179 aa6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 GCN1Q92616 2671 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-213ENST00000476903 PCM1Q15154 2024 aa6.59□□□□□ -1.36
CCDC88A-213ENST00000476903 ZNF462Q96JM2 2506 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 CFAP46Q8IYW2 2715 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 HELZ2Q9BYK8 2649 aaKnown RBP6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 C2orf74A8MZ97 194 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 C21orf140B9A014 251 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 J3QKU1 62 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 BTN3A1O00481 513 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 NKX2-8O15522 239 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 SLC28A2O43868 658 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 KDM1AO60341 852 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 KATNA1O75449 491 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 ZNF205O95201 554 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 FGGP02679 453 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 ZSCAN5DPP0CG00 497 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 ETS1P14921 441 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 OAS2P29728 719 aaKnown RBP6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 PDHA2P29803 388 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 RPL22P35268 128 aaKnown RBP6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 GRIA1P42261 906 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 ARCN1P48444 511 aaKnown RBP6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 BASP1P80723 227 aaKnown RBP6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 PLOD1Q02809 727 aaPredicted RBP6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 ACVR1Q04771 509 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 KCNAB2Q13303 367 aa6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 BOP1Q14137 746 aaKnown RBP6.58□□□□□ -1.36
CCDC88A-213ENST00000476903 SIX1Q15475 284 aaPredicted RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms