RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 MEIS2O14770 477 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 KHDRBS3O75525 346 aaKnown RBP2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 IFNAR1P17181 557 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 HNF4AP41235 474 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 SLC9A3P48764 834 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 ZNF75DP51815 510 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 TPD52P55327 224 aaPredicted RBP2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 ROR1Q01973 937 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 ACSM1Q08AH1 577 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 TFCP2Q12800 502 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 HYAL4Q2M3T9 481 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 RNF212Q495C1 297 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 FASTKD1Q53R41 847 aaKnown RBP2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 ZBTB49Q6ZSB9 765 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 TMPRSS11FQ6ZWK6 438 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 ANKRD23Q86SG2 305 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 FAM114A1Q8IWE2 563 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 CRYBG2Q8N1P7 616 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 TTC30BQ8N4P2 665 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 DNAJC22Q8N4W6 341 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 NKAIN3Q8N8D7 197 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 L3MBTL4Q8NA19 623 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 SLC4A11Q8NBS3 891 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 CAMKVQ8NCB2 501 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 SLAMF9Q96A28 289 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 SIPA1Q96FS4 1042 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 ZNF558Q96NG5 402 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 BTBD10Q9BSF8 475 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 LMF2Q9BU23 707 aaKnown RBP2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 EDEM3Q9BZQ6 932 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 ACKR4Q9NPB9 350 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 ABCB10Q9NRK6 738 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 DPP3Q9NY33 737 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 GRIP1Q9Y3R0 1128 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 NME7Q9Y5B8 376 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 LIPGQ9Y5X9 500 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 IGHV3OR16-10A0A075B7F0 116 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 A0A1W2PPQ1 181 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 HYKKA2RU49 373 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 PALM2-AKAP2B1ALY0 433 aaPredicted RBP2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 SOCS3O14543 225 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 PTGESO14684 152 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 KLF11O14901 512 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 TBCAO75347 108 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 CDC123O75794 336 aaPredicted RBP2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 RECQL5O94762 991 aaPredicted RBP2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 NXPH2O95156 264 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 CLDN1O95832 211 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 RAB40ALP0C0E4 278 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 SCG2P13521 617 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 CYP11B2P19099 503 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 MPZP25189 248 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 MTHFRP42898 656 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 PTGER3P43115 390 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 LIMK1P53667 647 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 CDR2Q01850 454 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 GPR17Q13304 367 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 RAPSNQ13702 412 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 MDH1BQ5I0G3 518 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 KRT39Q6A163 491 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 ZNF554Q86TJ5 538 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 COMMD2Q86X83 199 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 MFN1Q8IWA4 741 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 CPSF7Q8N684 471 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 OR2L2Q8NH16 312 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 RNF128Q8TEB7 428 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 ATL1Q8WXF7 558 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 SFXN2Q96NB2 322 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 LRRC3BQ96PB8 259 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 RAB3IPQ96QF0 476 aaPredicted RBP2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 SEPHS2Q99611 448 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 SOSTQ9BQB4 213 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 GPATCH1Q9BRR8 931 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 SLC25A23Q9BV35 468 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 LRRC61Q9BV99 259 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 RAB11FIP5Q9BXF6 653 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 TRIM6Q9C030 488 aaPredicted RBP2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 VN1R1Q9GZP7 353 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 Q9N2K0 584 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 MYNNQ9NPC7 610 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 LRWD1Q9UFC0 647 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 PRO0461Q9UI25 63 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 ANAPC5Q9UJX4 755 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 RNF150Q9ULK6 438 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 ABT1Q9ULW3 272 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 PADI2Q9Y2J8 665 aa2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 SOS1Q07889 1333 aaPredicted RBP2.67□□□□□ -1.98
CCDC88A-212ENST00000474059 E9PI62 339 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 WDPCPO95876 746 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 PENKP01210 267 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 IGKV3-15P01624 115 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 ATP5BP06576 529 aaKnown RBP2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 SMIM18P0DKX4 95 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 FDPSP14324 419 aaKnown RBP2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 UGT1A4P22310 534 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 AZGP1P25311 298 aaKnown RBP2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 MAGEA11P43364 429 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 POLR2LP62875 67 aaKnown RBP2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 DLK1P80370 383 aa2.66□□□□□ -1.98
CCDC88A-212ENST00000474059 POU5F1Q01860 360 aaKnown RBP2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms