RNA–Protein interactions for RNA: ENST00000474025.1

SNRNP40-204, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 3

Gene SNRNP40, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-204	ENST00000474025	LUC7L	Q9NQ29	371 aa	Known RBP	4.89	□□□□□ -1.63
SNRNP40-204	ENST00000474025	DDX56	Q9NY93	547 aa	Known RBP	4.89	□□□□□ -1.63
SNRNP40-204	ENST00000474025	SMARCAL1	Q9NZC9	954 aa		4.89	□□□□□ -1.63
SNRNP40-204	ENST00000474025	IL1RAPL1	Q9NZN1	696 aa		4.89	□□□□□ -1.63
SNRNP40-204	ENST00000474025	C3orf18	Q9UK00	162 aa		4.89	□□□□□ -1.63
SNRNP40-204	ENST00000474025	LUC7L2	Q9Y383	392 aa	Known RBP	4.89	□□□□□ -1.63
SNRNP40-204	ENST00000474025	HYOU1	Q9Y4L1	999 aa		4.89	□□□□□ -1.63
SNRNP40-204	ENST00000474025	KLK4	Q9Y5K2	254 aa		4.89	□□□□□ -1.63
SNRNP40-204	ENST00000474025	PRSS21	Q9Y6M0	314 aa		4.89	□□□□□ -1.63
SNRNP40-204	ENST00000474025	CPAMD8	Q8IZJ3	1885 aa		4.89	□□□□□ -1.63
SNRNP40-204	ENST00000474025	ANK2	Q01484	3957 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	IGHV1-45	A0A0A0MS14	117 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	OR5H15	A6NDH6	313 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	IDS	B3KWA1	339 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	QSOX1	O00391	747 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	PSTPIP1	O43586	416 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	SPOP	O43791	374 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	KDM1A	O60341	852 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	NRP2	O60462	931 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	PRAMEF2	O60811	474 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	BMP10	O95393	424 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	FTH1	P02794	183 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	ITGAM	P11215	1152 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	ESRRA	P11474	423 aa	Predicted RBP	4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	TNNT1	P13805	278 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	CD99	P14209	185 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	COMT	P21964	271 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	RBL1	P28749	1068 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	SLC1A1	P43005	524 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	SMS	P52788	366 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	CASP6	P55212	293 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	VSX2	P58304	361 aa	Predicted RBP	4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	CSNK1G2	P78368	415 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	PLOD1	Q02809	727 aa	Predicted RBP	4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	OCA2	Q04671	838 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	EEF1A2	Q05639	463 aa	Known RBP	4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	CACNG1	Q06432	222 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	GRB7	Q14451	532 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	ITIH4	Q14624	930 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	IQCB1	Q15051	598 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	FAM214A	Q32MH5	1076 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	SYTL3	Q4VX76	610 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	TFDP3	Q5H9I0	405 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	ZC3H12B	Q5HYM0	836 aa	Known RBP	4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	WASHC2D	Q5SRD0	308 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	FAAH2	Q6GMR7	532 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	ITPRIPL1	Q6GPH6	555 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	FRMPD2B	Q6IN97	320 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	PRMT9	Q6P2P2	845 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	CNST	Q6PJW8	725 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	FIGLA	Q6QHK4	219 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025		Q6ZPB1	254 aa	Predicted RBP	4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	ARHGEF18	Q6ZSZ5	1173 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	NCCRP1	Q6ZVX7	275 aa	Predicted RBP	4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	NEK10	Q6ZWH5	1172 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	TAS2R42	Q7RTR8	314 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	TMTC1	Q8IUR5	882 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	VRK3	Q8IV63	474 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	DCUN1D3	Q8IWE4	304 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	RHOT2	Q8IXI1	618 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	KLHDC8B	Q8IXV7	354 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	SLC22A15	Q8IZD6	547 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	AMER2	Q8N7J2	671 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	OR2L8	Q8NGY9	312 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	THAP3	Q8WTV1	239 aa	Predicted RBP	4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	ELMO1	Q92556	727 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	SLC22A18	Q96BI1	424 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	MIEF2	Q96C03	454 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	IQCD	Q96DY2	449 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	MAGED4	Q96JG8	741 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	C10orf90	Q96M02	699 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	IL17F	Q96PD4	163 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	TREX2	Q9BQ50	279 aa	Predicted RBP	4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	TBL1Y	Q9BQ87	522 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	ENKD1	Q9H0I2	346 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	ARNT2	Q9HBZ2	717 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	ZNF304	Q9HCX3	659 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	INTS7	Q9NVH2	962 aa	Known RBP	4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	RIC8B	Q9NVN3	520 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	NLE1	Q9NVX2	485 aa	Predicted RBP	4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	IMPACT	Q9P2X3	320 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	ZNF282	Q9UDV7	671 aa	Predicted RBP	4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	CIDEB	Q9UHD4	219 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	FEZ2	Q9UHY8	353 aa	Predicted RBP	4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	EDAR	Q9UNE0	448 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	ZNF835	Q9Y2P0	537 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	AAR2	Q9Y312	384 aa	Known RBP	4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	MEMO1	Q9Y316	297 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	NEU2	Q9Y3R4	380 aa		4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	FBN1	P35555	2871 aa	Known RBP	4.88	□□□□□ -1.63
SNRNP40-204	ENST00000474025	ATR	Q13535	2644 aa		4.87	□□□□□ -1.63
SNRNP40-204	ENST00000474025	INTS1	Q8N201	2190 aa	Known RBP	4.87	□□□□□ -1.63
SNRNP40-204	ENST00000474025	LOC102723996	A0A087X1L8	192 aa		4.87	□□□□□ -1.63
SNRNP40-204	ENST00000474025	LOC105369274	A0A096LPK9	316 aa		4.87	□□□□□ -1.63
SNRNP40-204	ENST00000474025	LOC102723532	A0A0G2JNH3	316 aa		4.87	□□□□□ -1.63
SNRNP40-204	ENST00000474025	HYKK	A2RU49	373 aa		4.87	□□□□□ -1.63
SNRNP40-204	ENST00000474025	SLC35F4	A4IF30	521 aa		4.87	□□□□□ -1.63
SNRNP40-204	ENST00000474025	OR51F1	A6NGY5	319 aa		4.87	□□□□□ -1.63
SNRNP40-204	ENST00000474025	TARM1	B6A8C7	271 aa		4.87	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms