RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 HOMER3Q9NSC5 361 aa18.88■□□□□ 0.61
COL9A3-210ENST00000472880 ZC3H7BQ9UGR2 993 aaKnown RBP18.88■□□□□ 0.61
COL9A3-210ENST00000472880 UTP20O75691 2785 aaKnown RBP18.87■□□□□ 0.61
COL9A3-210ENST00000472880 A0A1W2PPV9 198 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 ANKUB1A6NFN9 424 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 VSTM2BA6NLU5 285 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 E5RI56 91 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 CEP104O60308 925 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 NRP2O60462 931 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 MATN4O95460 622 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 CCDC175P0C221 793 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 CHRM3P20309 590 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 CARSP49589 748 aaKnown RBP18.87■□□□□ 0.61
COL9A3-210ENST00000472880 TERF1P54274 439 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 ADARP55265 1226 aaKnown RBP18.87■□□□□ 0.61
COL9A3-210ENST00000472880 SARNPP82979 210 aaKnown RBP18.87■□□□□ 0.61
COL9A3-210ENST00000472880 FASTKQ14296 549 aaKnown RBP18.87■□□□□ 0.61
COL9A3-210ENST00000472880 GBX1Q14549 363 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 HIF1AQ16665 826 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 MUM1Q2TAK8 710 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 ANKRD20A4Q4UJ75 823 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 CASC4Q6P4E1 433 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 PARP9Q8IXQ6 854 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 COG1Q8WTW3 980 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 DPH7Q9BTV6 452 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 LHPPQ9H008 270 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 EPS8L2Q9H6S3 715 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 FAM114A2Q9NRY5 505 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 AGPAT4Q9NRZ5 378 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 ZNF282Q9UDV7 671 aaPredicted RBP18.87■□□□□ 0.61
COL9A3-210ENST00000472880 NOVA2Q9UNW9 492 aaKnown RBP18.87■□□□□ 0.61
COL9A3-210ENST00000472880 VPS9D1Q9Y2B5 631 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 ICE1Q9Y2F5 2266 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 CRYL1Q9Y2S2 319 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 CSAG2Q9Y5P2 127 aa18.87■□□□□ 0.61
COL9A3-210ENST00000472880 LOC105369274A0A096LPK9 316 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 LOC102723532A0A0G2JNH3 316 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 TCRBV7S3A2A0A539 114 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 OR2A25A4D2G3 310 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 VPS26AO75436 327 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 FBLP22087 321 aaKnown RBP18.86■□□□□ 0.61
COL9A3-210ENST00000472880 RPA3P35244 121 aaPredicted RBP18.86■□□□□ 0.61
COL9A3-210ENST00000472880 VPS41P49754 854 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 TSTA3Q13630 321 aaPredicted RBP18.86■□□□□ 0.61
COL9A3-210ENST00000472880 TRIP13Q15645 432 aaPredicted RBP18.86■□□□□ 0.61
COL9A3-210ENST00000472880 CRB2Q5IJ48 1285 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 EEF1AKMT2Q5JPI9 291 aaKnown RBP18.86■□□□□ 0.61
COL9A3-210ENST00000472880 LRRC8AQ8IWT6 810 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 PRSS58Q8IYP2 241 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 OR4N4Q8N0Y3 316 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 TRIM58Q8NG06 486 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 OR11G2Q8NGC1 345 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 OR9A1PQ8NGU1 263 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 STT3BQ8TCJ2 826 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 SMPDL3AQ92484 453 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 MIEF2Q96C03 454 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 CABS1Q96KC9 395 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 CNDP1Q96KN2 507 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 MRPS30Q9NP92 439 aaKnown RBP18.86■□□□□ 0.61
COL9A3-210ENST00000472880 SAMD15Q9P1V8 674 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 ERRFI1Q9UJM3 462 aaPredicted RBP18.86■□□□□ 0.61
COL9A3-210ENST00000472880 NTNG1Q9Y2I2 539 aa18.86■□□□□ 0.61
COL9A3-210ENST00000472880 ARHGEF33A8MVX0 844 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 MAP2K7O14733 419 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 PHF2O75151 1096 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 MED26O95402 600 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 CATP04040 527 aaKnown RBP18.85■□□□□ 0.61
COL9A3-210ENST00000472880 ZGLP1P0C6A0 271 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 ERGP11308 486 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 PKMP14618 531 aaKnown RBP18.85■□□□□ 0.61
COL9A3-210ENST00000472880 ACPPP15309 386 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 KLC1Q07866 573 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 KCNJ11Q14654 390 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 KLHL38Q2WGJ6 581 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 ACSBG2Q5FVE4 666 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 ARMC3Q5W041 872 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 SUSD1Q6UWL2 747 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 IGFL2Q6UWQ7 119 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 ZNF662Q6ZS27 426 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 CILP2Q8IUL8 1156 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 DNAJB14Q8TBM8 379 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 THOC3Q96J01 351 aaKnown RBP18.85■□□□□ 0.61
COL9A3-210ENST00000472880 C10orf90Q96M02 699 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 C5orf34Q96MH7 638 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 GRPEL1Q9HAV7 217 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 INTS10Q9NVR2 710 aaKnown RBP18.85■□□□□ 0.61
COL9A3-210ENST00000472880 C3orf18Q9UK00 162 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 SLC5A6Q9Y289 635 aa18.85■□□□□ 0.61
COL9A3-210ENST00000472880 ZNF839A8K0R7 811 aa18.84■□□□□ 0.61
COL9A3-210ENST00000472880 MYO1CO00159 1063 aa18.84■□□□□ 0.61
COL9A3-210ENST00000472880 PRPF4O43172 522 aaKnown RBP eCLIP18.84■□□□□ 0.61
COL9A3-210ENST00000472880 AVILO75366 819 aa18.84■□□□□ 0.61
COL9A3-210ENST00000472880 PSIP1O75475 530 aaKnown RBP18.84■□□□□ 0.61
COL9A3-210ENST00000472880 CCNDBP1O95273 360 aa18.84■□□□□ 0.61
COL9A3-210ENST00000472880 HPP00738 406 aa18.84■□□□□ 0.61
COL9A3-210ENST00000472880 CXCR5P32302 372 aa18.84■□□□□ 0.61
COL9A3-210ENST00000472880 YBX1P67809 324 aaKnown RBP18.84■□□□□ 0.61
COL9A3-210ENST00000472880 GPS1Q13098 491 aa18.84■□□□□ 0.61
COL9A3-210ENST00000472880 ARHGAP19Q14CB8 494 aa18.84■□□□□ 0.61
COL9A3-210ENST00000472880 KCTD19Q17RG1 926 aaPredicted RBP18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms