RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 MAP3K3Q99759 626 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 FGF21Q9NSA1 209 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 ACTR10Q9NZ32 417 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 SPATA7Q9P0W8 599 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 PCM1Q15154 2024 aa17.08■□□□□ 0.32
COL7A1-205ENST00000465238 DOPEY2Q9Y3R5 2298 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 PABPN1LA6NDY0 278 aaKnown RBP17.07■□□□□ 0.32
COL7A1-205ENST00000465238 ISM1B1AKI9 464 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 MKRN2OSH3BPM6 223 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 SLC16A5O15375 505 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 TSPAN12O95859 305 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 SYF2O95926 243 aaKnown RBP17.07■□□□□ 0.32
COL7A1-205ENST00000465238 ZNF37AP17032 561 aaPredicted RBP17.07■□□□□ 0.32
COL7A1-205ENST00000465238 CYP2A7P20853 494 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 PRDX3P30048 256 aaKnown RBP17.07■□□□□ 0.32
COL7A1-205ENST00000465238 KPNA2P52292 529 aaKnown RBP17.07■□□□□ 0.32
COL7A1-205ENST00000465238 RAB10P61026 200 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 VSNL1P62760 191 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 HSD11B2P80365 405 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 SP140Q13342 867 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 ZNF460Q14592 562 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 KCNAB1Q14722 419 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 EEF1AKMT2Q5JPI9 291 aaKnown RBP17.07■□□□□ 0.32
COL7A1-205ENST00000465238 PWWP2BQ6NUJ5 590 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 WDR93Q6P2C0 686 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 TMEM207Q6UWW9 146 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 TAOK1Q7L7X3 1001 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 D2HGDHQ8N465 521 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 C2orf73Q8N5S3 287 aaPredicted RBP17.07■□□□□ 0.32
COL7A1-205ENST00000465238 OR2L8Q8NGY9 312 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 CT55Q8WUE5 264 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 SLC44A1Q8WWI5 657 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 TWSG1Q9GZX9 223 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 POMT2Q9UKY4 750 aa17.07■□□□□ 0.32
COL7A1-205ENST00000465238 EXOC1LA0A1B0GW35 172 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 CDC14CA4D256 554 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 ZNF839A8K0R7 811 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 MYO1CO00159 1063 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 PHGDHO43175 533 aaKnown RBP17.06■□□□□ 0.32
COL7A1-205ENST00000465238 FURINP09958 794 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 HIST1H2AGP0C0S8 130 aaPredicted RBP17.06■□□□□ 0.32
COL7A1-205ENST00000465238 EBLN1P0CF75 366 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 HIST1H2ADP20671 130 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 CDH3P22223 829 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 HSD17B2P37059 387 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 SERPINB9P50453 376 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 FOXK1P85037 733 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 KLRB1Q12918 225 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 SLC29A2Q14542 456 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 KIR2DS3Q14952 304 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 MROH9Q5TGP6 573 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 TCTN3Q6NUS6 607 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 RAPH1Q70E73 1250 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 OR8K5Q8NH50 307 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 UBLCP1Q8WVY7 318 aaPredicted RBP17.06■□□□□ 0.32
COL7A1-205ENST00000465238 SLC22A18Q96BI1 424 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 HIST1H2AHQ96KK5 128 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 PAFAH2Q99487 392 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 PKP4Q99569 1192 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 HIST1H2AJQ99878 128 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 CCDC77Q9BR77 488 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 H2AFJQ9BTM1 129 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 MENTQ9BUN1 341 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 GPR87Q9BY21 358 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 TRIM54Q9BYV2 358 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 PARVBQ9HBI1 364 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 C1GALT1Q9NS00 363 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 SPHK1Q9NYA1 384 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 ADAMTS6Q9UKP5 1117 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 TP53TG5Q9Y2B4 290 aa17.06■□□□□ 0.32
COL7A1-205ENST00000465238 KRT87PA6NCN2 255 aa17.05■□□□□ 0.32
COL7A1-205ENST00000465238 MAP3K7O43318 606 aa17.05■□□□□ 0.32
COL7A1-205ENST00000465238 RFPL1O75677 317 aa17.05■□□□□ 0.32
COL7A1-205ENST00000465238 ZBTB11O95625 1053 aaPredicted RBP17.05■□□□□ 0.32
COL7A1-205ENST00000465238 UGT2B7P16662 529 aa17.05■□□□□ 0.32
COL7A1-205ENST00000465238 CRABP2P29373 138 aa17.05■□□□□ 0.32
COL7A1-205ENST00000465238 BMPR2Q13873 1038 aa17.05■□□□□ 0.32
COL7A1-205ENST00000465238 ARHGAP19Q14CB8 494 aa17.05■□□□□ 0.32
COL7A1-205ENST00000465238 TMTC4Q5T4D3 741 aa17.05■□□□□ 0.32
COL7A1-205ENST00000465238 LGSNQ5TDP6 509 aa17.05■□□□□ 0.32
COL7A1-205ENST00000465238 SPESP1Q6UW49 350 aa17.05■□□□□ 0.32
COL7A1-205ENST00000465238 TAX1BP1Q86VP1 789 aa17.05■□□□□ 0.32
COL7A1-205ENST00000465238 LINC01555Q8NAE3 123 aa17.05■□□□□ 0.32
COL7A1-205ENST00000465238 ANKRD7Q92527 254 aa17.05■□□□□ 0.32
COL7A1-205ENST00000465238 ACTL8Q9H568 366 aa17.05■□□□□ 0.32
COL7A1-205ENST00000465238 PDE10AQ9Y233 779 aa17.05■□□□□ 0.32
COL7A1-205ENST00000465238 CPNE3O75131 537 aaKnown RBP17.04■□□□□ 0.32
COL7A1-205ENST00000465238 KRT38O76015 456 aa17.04■□□□□ 0.32
COL7A1-205ENST00000465238 NTRK1P04629 796 aa17.04■□□□□ 0.32
COL7A1-205ENST00000465238 CCDC166P0CW27 439 aa17.04■□□□□ 0.32
COL7A1-205ENST00000465238 ZKSCAN8Q15776 578 aaPredicted RBP17.04■□□□□ 0.32
COL7A1-205ENST00000465238 CYP2A13Q16696 494 aa17.04■□□□□ 0.32
COL7A1-205ENST00000465238 COLEC12Q5KU26 742 aa17.04■□□□□ 0.32
COL7A1-205ENST00000465238 FBXO38Q6PIJ6 1188 aa17.04■□□□□ 0.32
COL7A1-205ENST00000465238 CMC1Q7Z7K0 106 aa17.04■□□□□ 0.32
COL7A1-205ENST00000465238 APLFQ8IW19 511 aaPredicted RBP17.04■□□□□ 0.32
COL7A1-205ENST00000465238 LMNTD1Q8N9Z9 388 aa17.04■□□□□ 0.32
COL7A1-205ENST00000465238 HMGCLL1Q8TB92 370 aa17.04■□□□□ 0.32
COL7A1-205ENST00000465238 DENND1AQ8TEH3 1009 aa17.04■□□□□ 0.32
COL7A1-205ENST00000465238 ANKRD49Q8WVL7 239 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms