RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 PRMT9Q6P2P2 845 aa21.58■■□□□ 1.05
USP4-208ENST00000464168 LAPTM4BQ86VI4 370 aa21.58■■□□□ 1.05
USP4-208ENST00000464168 GSDMBQ8TAX9 411 aa21.58■■□□□ 1.05
USP4-208ENST00000464168 MRFAP1L1Q96HT8 127 aa21.58■■□□□ 1.05
USP4-208ENST00000464168 TRIM56Q9BRZ2 755 aaKnown RBP21.58■■□□□ 1.05
USP4-208ENST00000464168 C3orf18Q9UK00 162 aa21.58■■□□□ 1.05
USP4-208ENST00000464168 FAM169AQ9Y6X4 670 aa21.58■■□□□ 1.05
USP4-208ENST00000464168 ZNF75DP51815 510 aa21.57■■□□□ 1.04
USP4-208ENST00000464168 ZNF324BQ6AW86 544 aaPredicted RBP21.57■■□□□ 1.04
USP4-208ENST00000464168 FBXO42Q6P3S6 717 aa21.57■■□□□ 1.04
USP4-208ENST00000464168 FAM180AQ6UWF9 173 aa21.57■■□□□ 1.04
USP4-208ENST00000464168 RNF44Q7L0R7 432 aa21.57■■□□□ 1.04
USP4-208ENST00000464168 KBTBD2Q8IY47 623 aa21.57■■□□□ 1.04
USP4-208ENST00000464168 BCORP1Q8N888 145 aa21.57■■□□□ 1.04
USP4-208ENST00000464168 PPHLN1Q8NEY8 458 aaKnown RBP21.57■■□□□ 1.04
USP4-208ENST00000464168 OR1N1Q8NGS0 311 aa21.57■■□□□ 1.04
USP4-208ENST00000464168 SKA2Q8WVK7 121 aaPredicted RBP21.57■■□□□ 1.04
USP4-208ENST00000464168 PSMF1Q92530 271 aa21.57■■□□□ 1.04
USP4-208ENST00000464168 C10orf90Q96M02 699 aa21.57■■□□□ 1.04
USP4-208ENST00000464168 PANX3Q96QZ0 392 aa21.57■■□□□ 1.04
USP4-208ENST00000464168 OLAHQ9NV23 265 aa21.57■■□□□ 1.04
USP4-208ENST00000464168 ZNF148Q9UQR1 794 aa21.57■■□□□ 1.04
USP4-208ENST00000464168 ENTPD4Q9Y227 616 aa21.57■■□□□ 1.04
USP4-208ENST00000464168 IGLV3-12A0A075B6K2 115 aa21.56■■□□□ 1.04
USP4-208ENST00000464168 MAP2K7O14733 419 aa21.56■■□□□ 1.04
USP4-208ENST00000464168 KPNA5O15131 536 aa21.56■■□□□ 1.04
USP4-208ENST00000464168 HNRNPRO43390 633 aaKnown RBP21.56■■□□□ 1.04
USP4-208ENST00000464168 EIF2S1P05198 315 aaKnown RBP21.56■■□□□ 1.04
USP4-208ENST00000464168 APRTP07741 180 aa21.56■■□□□ 1.04
USP4-208ENST00000464168 PRF1P14222 555 aa21.56■■□□□ 1.04
USP4-208ENST00000464168 PRTGQ2VWP7 1150 aa21.56■■□□□ 1.04
USP4-208ENST00000464168 VWA2Q5GFL6 755 aa21.56■■□□□ 1.04
USP4-208ENST00000464168 PCID2Q5JVF3 399 aa21.56■■□□□ 1.04
USP4-208ENST00000464168 OTOAQ7RTW8 1153 aa21.56■■□□□ 1.04
USP4-208ENST00000464168 RAB42Q8N4Z0 105 aa21.56■■□□□ 1.04
USP4-208ENST00000464168 C1orf54Q8WWF1 131 aa21.56■■□□□ 1.04
USP4-208ENST00000464168 MARVELD3Q96A59 401 aa21.56■■□□□ 1.04
USP4-208ENST00000464168 FRMD8P1Q9BZ68 369 aaPredicted RBP21.56■■□□□ 1.04
USP4-208ENST00000464168 TREX1Q9NSU2 369 aa21.56■■□□□ 1.04
USP4-208ENST00000464168 GNPTGQ9UJJ9 305 aa21.56■■□□□ 1.04
USP4-208ENST00000464168 MRFAP1Q9Y605 127 aa21.56■■□□□ 1.04
USP4-208ENST00000464168 OR2A25A4D2G3 310 aa21.55■■□□□ 1.04
USP4-208ENST00000464168 JRKO75564 520 aa21.55■■□□□ 1.04
USP4-208ENST00000464168 USP1O94782 785 aa21.55■■□□□ 1.04
USP4-208ENST00000464168 PRR35P0CG20 571 aa21.55■■□□□ 1.04
USP4-208ENST00000464168 COX6A1P12074 109 aa21.55■■□□□ 1.04
USP4-208ENST00000464168 RPS3P23396 243 aaKnown RBP eCLIP21.55■■□□□ 1.04
USP4-208ENST00000464168 SOX11P35716 441 aa21.55■■□□□ 1.04
USP4-208ENST00000464168 CCNFP41002 786 aa21.55■■□□□ 1.04
USP4-208ENST00000464168 CRADDP78560 199 aa21.55■■□□□ 1.04
USP4-208ENST00000464168 KIF5AQ12840 1032 aa21.55■■□□□ 1.04
USP4-208ENST00000464168 FASTKQ14296 549 aaKnown RBP21.55■■□□□ 1.04
USP4-208ENST00000464168 MUM1Q2TAK8 710 aa21.55■■□□□ 1.04
USP4-208ENST00000464168 SP5Q6BEB4 398 aaPredicted RBP21.55■■□□□ 1.04
USP4-208ENST00000464168 NDUFAF7Q7L592 441 aa21.55■■□□□ 1.04
USP4-208ENST00000464168 FJX1Q86VR8 437 aa21.55■■□□□ 1.04
USP4-208ENST00000464168 LRRC6Q86X45 466 aa21.55■■□□□ 1.04
USP4-208ENST00000464168 ZFYVE21Q9BQ24 234 aa21.55■■□□□ 1.04
USP4-208ENST00000464168 PLA2G3Q9NZ20 509 aa21.55■■□□□ 1.04
USP4-208ENST00000464168 A0A1B0GUH1 482 aa21.54■■□□□ 1.04
USP4-208ENST00000464168 ARHGAP10A1A4S6 786 aa21.54■■□□□ 1.04
USP4-208ENST00000464168 NDUFS3O75489 264 aa21.54■■□□□ 1.04
USP4-208ENST00000464168 ZSCAN5DPP0CG00 497 aa21.54■■□□□ 1.04
USP4-208ENST00000464168 FBLP22087 321 aaKnown RBP21.54■■□□□ 1.04
USP4-208ENST00000464168 SESN2P58004 480 aaPredicted RBP21.54■■□□□ 1.04
USP4-208ENST00000464168 ARG2P78540 354 aa21.54■■□□□ 1.04
USP4-208ENST00000464168 SNX1Q13596 522 aa21.54■■□□□ 1.04
USP4-208ENST00000464168 CNSTQ6PJW8 725 aa21.54■■□□□ 1.04
USP4-208ENST00000464168 MPP5Q8N3R9 675 aa21.54■■□□□ 1.04
USP4-208ENST00000464168 BRIX1Q8TDN6 353 aaKnown RBP21.54■■□□□ 1.04
USP4-208ENST00000464168 FOPNLQ96NB1 174 aa21.54■■□□□ 1.04
USP4-208ENST00000464168 TAAR6Q96RI8 345 aa21.54■■□□□ 1.04
USP4-208ENST00000464168 DPH7Q9BTV6 452 aa21.54■■□□□ 1.04
USP4-208ENST00000464168 SPATA7Q9P0W8 599 aa21.54■■□□□ 1.04
USP4-208ENST00000464168 PTGFRNQ9P2B2 879 aa21.54■■□□□ 1.04
USP4-208ENST00000464168 CAPN6Q9Y6Q1 641 aa21.54■■□□□ 1.04
USP4-208ENST00000464168 FBN2P35556 2912 aa21.53■■□□□ 1.04
USP4-208ENST00000464168 NSG1A0A0A6YYJ2 146 aa21.53■■□□□ 1.04
USP4-208ENST00000464168 A0A1W2PQ72 361 aa21.53■■□□□ 1.04
USP4-208ENST00000464168 DYTNA2CJ06 578 aa21.53■■□□□ 1.04
USP4-208ENST00000464168 H0YGG7 62 aa21.53■■□□□ 1.04
USP4-208ENST00000464168 MATN4O95460 622 aa21.53■■□□□ 1.04
USP4-208ENST00000464168 TNFSF10P50591 281 aa21.53■■□□□ 1.04
USP4-208ENST00000464168 TDGF1P3P51864 188 aa21.53■■□□□ 1.04
USP4-208ENST00000464168 EMP2P54851 167 aa21.53■■□□□ 1.04
USP4-208ENST00000464168 EMP3P54852 163 aa21.53■■□□□ 1.04
USP4-208ENST00000464168 EIF3BP55884 814 aaKnown RBP21.53■■□□□ 1.04
USP4-208ENST00000464168 KCNK10P57789 538 aa21.53■■□□□ 1.04
USP4-208ENST00000464168 ARF3P61204 181 aaPredicted RBP21.53■■□□□ 1.04
USP4-208ENST00000464168 CTSL3PQ5NE16 218 aa21.53■■□□□ 1.04
USP4-208ENST00000464168 SLC13A5Q86YT5 568 aaPredicted RBP21.53■■□□□ 1.04
USP4-208ENST00000464168 TMEM139Q8IV31 216 aa21.53■■□□□ 1.04
USP4-208ENST00000464168 HAS2Q92819 552 aa21.53■■□□□ 1.04
USP4-208ENST00000464168 RELTQ969Z4 430 aa21.53■■□□□ 1.04
USP4-208ENST00000464168 MAGEB10Q96LZ2 347 aaPredicted RBP21.53■■□□□ 1.04
USP4-208ENST00000464168 BIRC8Q96P09 236 aa21.53■■□□□ 1.04
USP4-208ENST00000464168 BAG1Q99933 345 aaPredicted RBP21.53■■□□□ 1.04
USP4-208ENST00000464168 DESI2Q9BSY9 194 aa21.53■■□□□ 1.04
USP4-208ENST00000464168 ACAT2Q9BWD1 397 aa21.53■■□□□ 1.04
USP4-208ENST00000464168 SYNPO2LQ9H987 977 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms