RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 RBM20Q5T481 1227 aaKnown RBP22.04■■□□□ 1.12
PTPN4-208ENST00000460289 TRMT10BQ6PF06 316 aaKnown RBP22.04■■□□□ 1.12
PTPN4-208ENST00000460289 PAQR3Q6TCH7 311 aa22.04■■□□□ 1.12
PTPN4-208ENST00000460289 TTLL10Q6ZVT0 673 aa22.04■■□□□ 1.12
PTPN4-208ENST00000460289 MYO1HQ8N1T3 1032 aa22.04■■□□□ 1.12
PTPN4-208ENST00000460289 ZNF285Q96NJ3 590 aa22.04■■□□□ 1.12
PTPN4-208ENST00000460289 ZFATQ9P243 1243 aa22.04■■□□□ 1.12
PTPN4-208ENST00000460289 NDOR1Q9UHB4 597 aa22.04■■□□□ 1.12
PTPN4-208ENST00000460289 VWA7Q9Y334 891 aa22.04■■□□□ 1.12
PTPN4-208ENST00000460289 ZNF462Q96JM2 2506 aa22.03■■□□□ 1.12
PTPN4-208ENST00000460289 SLC16A5O15375 505 aa22.03■■□□□ 1.12
PTPN4-208ENST00000460289 CTSVO60911 334 aa22.03■■□□□ 1.12
PTPN4-208ENST00000460289 PIM1P11309 404 aaPredicted RBP22.03■■□□□ 1.12
PTPN4-208ENST00000460289 PLA2G2AP14555 144 aa22.03■■□□□ 1.12
PTPN4-208ENST00000460289 GCGRP47871 477 aa22.03■■□□□ 1.12
PTPN4-208ENST00000460289 CDKN2DP55273 166 aa22.03■■□□□ 1.12
PTPN4-208ENST00000460289 ABATP80404 500 aa22.03■■□□□ 1.12
PTPN4-208ENST00000460289 MRPS25P82663 173 aaKnown RBP22.03■■□□□ 1.12
PTPN4-208ENST00000460289 MGAT5Q09328 741 aa22.03■■□□□ 1.12
PTPN4-208ENST00000460289 PDAP1Q13442 181 aaKnown RBP22.03■■□□□ 1.12
PTPN4-208ENST00000460289 NKAIN1Q4KMZ8 207 aa22.03■■□□□ 1.12
PTPN4-208ENST00000460289 ICE2Q659A1 982 aa22.03■■□□□ 1.12
PTPN4-208ENST00000460289 ZBED8Q8IZ13 594 aa22.03■■□□□ 1.12
PTPN4-208ENST00000460289 GPATCH11Q8N954 259 aa22.03■■□□□ 1.12
PTPN4-208ENST00000460289 ADAMTS17Q8TE56 1095 aa22.03■■□□□ 1.12
PTPN4-208ENST00000460289 CCDC138Q96M89 665 aa22.03■■□□□ 1.12
PTPN4-208ENST00000460289 CUTCQ9NTM9 273 aa22.03■■□□□ 1.12
PTPN4-208ENST00000460289 BOD1L1Q8NFC6 3051 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 A0A0J9YVX5 310 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 A0A1B0GX78 115 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 OR2A25A4D2G3 310 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 FITM1A5D6W6 292 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 RAD51CO43502 376 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 KLF7O75840 302 aaPredicted RBP22.02■■□□□ 1.12
PTPN4-208ENST00000460289 VSX2P58304 361 aaPredicted RBP22.02■■□□□ 1.12
PTPN4-208ENST00000460289 IL2P60568 153 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 C2orf54Q08AI8 447 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 SP140Q13342 867 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 WASHC2DQ5SRD0 308 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 HECTD2Q5U5R9 776 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 FAM45BPQ6NSW5 357 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 FBXO42Q6P3S6 717 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 PPFIBP2Q8ND30 876 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 FAM45AQ8TCE6 357 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 ZFYVE21Q9BQ24 234 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 PLCD4Q9BRC7 762 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 DPH5Q9H2P9 285 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 PARVBQ9HBI1 364 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 MOCS1Q9NZB8 636 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 SLC17A6Q9P2U8 582 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 TAC3Q9UHF0 121 aa22.02■■□□□ 1.12
PTPN4-208ENST00000460289 UTP11Q9Y3A2 253 aaKnown RBP22.02■■□□□ 1.12
PTPN4-208ENST00000460289 TLN1Q9Y490 2541 aaKnown RBP22.01■■□□□ 1.11
PTPN4-208ENST00000460289 DSCR3O14972 297 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 SLC28A2O43868 658 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 HIST1H2AGP0C0S8 130 aaPredicted RBP22.01■■□□□ 1.11
PTPN4-208ENST00000460289 HIST1H2ADP20671 130 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 YBX1P67809 324 aaKnown RBP22.01■■□□□ 1.11
PTPN4-208ENST00000460289 NFKB2Q00653 900 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 SSPNQ14714 243 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 THEMIS2Q5TEJ8 643 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 FRMPD2BQ6IN97 320 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 RNF44Q7L0R7 432 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 SLC26A11Q86WA9 606 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 RAB43Q86YS6 212 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 SPNS2Q8IVW8 549 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 PYROXD1Q8WU10 500 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 LINGO1Q96FE5 620 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 HIST1H2AHQ96KK5 128 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 IP6K3Q96PC2 410 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 HIST1H2AJQ99878 128 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 H2AFJQ9BTM1 129 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 SLC6A20Q9NP91 592 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 ZNF71Q9NQZ8 489 aaPredicted RBP22.01■■□□□ 1.11
PTPN4-208ENST00000460289 ACSS2Q9NR19 701 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 NSMCE4AQ9NXX6 385 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 TLK1Q9UKI8 766 aa22.01■■□□□ 1.11
PTPN4-208ENST00000460289 HYKKA2RU49 373 aa22■■□□□ 1.11
PTPN4-208ENST00000460289 ARGFXA6NJG6 315 aa22■■□□□ 1.11
PTPN4-208ENST00000460289 EIF3HO15372 352 aaKnown RBP eCLIP22■■□□□ 1.11
PTPN4-208ENST00000460289 SUV39H1O43463 412 aa22■■□□□ 1.11
PTPN4-208ENST00000460289 ONECUT2O95948 504 aa22■■□□□ 1.11
PTPN4-208ENST00000460289 FDXRP22570 491 aa22■■□□□ 1.11
PTPN4-208ENST00000460289 IMPA1P29218 277 aa22■■□□□ 1.11
PTPN4-208ENST00000460289 FOLR3P41439 243 aa22■■□□□ 1.11
PTPN4-208ENST00000460289 RELAQ04206 551 aa22■■□□□ 1.11
PTPN4-208ENST00000460289 ILF2Q12905 390 aaKnown RBP22■■□□□ 1.11
PTPN4-208ENST00000460289 FASTKD3Q14CZ7 662 aaKnown RBP22■■□□□ 1.11
PTPN4-208ENST00000460289 LACTB2Q53H82 288 aaPredicted RBP22■■□□□ 1.11
PTPN4-208ENST00000460289 FAM69BQ5VUD6 431 aa22■■□□□ 1.11
PTPN4-208ENST00000460289 DUPD1Q68J44 220 aa22■■□□□ 1.11
PTPN4-208ENST00000460289 TCTN3Q6NUS6 607 aa22■■□□□ 1.11
PTPN4-208ENST00000460289 MRPL14Q6P1L8 145 aaKnown RBP22■■□□□ 1.11
PTPN4-208ENST00000460289 PRICKLE2Q7Z3G6 844 aa22■■□□□ 1.11
PTPN4-208ENST00000460289 LRRC56Q8IYG6 542 aaPredicted RBP22■■□□□ 1.11
PTPN4-208ENST00000460289 RAB17Q9H0T7 212 aa22■■□□□ 1.11
PTPN4-208ENST00000460289 ING2Q9H160 280 aa22■■□□□ 1.11
PTPN4-208ENST00000460289 ABCF3Q9NUQ8 709 aa22■■□□□ 1.11
PTPN4-208ENST00000460289 ADAMTS6Q9UKP5 1117 aa22■■□□□ 1.11
PTPN4-208ENST00000460289 PDE10AQ9Y233 779 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms