RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 REEP4Q9H6H4 257 aa8.76□□□□□ -1.01
NIPBL-202ENST00000448238 ZDHHC6Q9H6R6 413 aa8.76□□□□□ -1.01
NIPBL-202ENST00000448238 OR2S2Q9NQN1 319 aa8.76□□□□□ -1.01
NIPBL-202ENST00000448238 HEBP1Q9NRV9 189 aa8.76□□□□□ -1.01
NIPBL-202ENST00000448238 CISHQ9NSE2 258 aa8.76□□□□□ -1.01
NIPBL-202ENST00000448238 MYH13Q9UKX3 1938 aa8.76□□□□□ -1.01
NIPBL-202ENST00000448238 MTMR11A4FU01 709 aa8.76□□□□□ -1.01
NIPBL-202ENST00000448238 CLDN9O95484 217 aa8.76□□□□□ -1.01
NIPBL-202ENST00000448238 YBX3P16989 372 aaKnown RBP eCLIP8.76□□□□□ -1.011e-6■■□□□ 11.7
NIPBL-202ENST00000448238 BDKRB2P30411 391 aa8.76□□□□□ -1.01
NIPBL-202ENST00000448238 TLE4Q04727 773 aa8.76□□□□□ -1.01
NIPBL-202ENST00000448238 ZNF829Q3KNS6 432 aaPredicted RBP8.76□□□□□ -1.01
NIPBL-202ENST00000448238 SLC39A12Q504Y0 691 aa8.76□□□□□ -1.01
NIPBL-202ENST00000448238 ATAT1Q5SQI0 421 aa8.76□□□□□ -1.01
NIPBL-202ENST00000448238 DUPD1Q68J44 220 aa8.76□□□□□ -1.01
NIPBL-202ENST00000448238 NAT16Q8N8M0 369 aa8.76□□□□□ -1.01
NIPBL-202ENST00000448238 TTLQ8NG68 377 aa8.76□□□□□ -1.01
NIPBL-202ENST00000448238 ACSF2Q96CM8 615 aaPredicted RBP8.76□□□□□ -1.01
NIPBL-202ENST00000448238 TARS2Q9BW92 718 aaKnown RBP8.76□□□□□ -1.01
NIPBL-202ENST00000448238 STUB1Q9UNE7 303 aa8.76□□□□□ -1.01
NIPBL-202ENST00000448238 HOXD8P13378 290 aaPredicted RBP8.75□□□□□ -1.01
NIPBL-202ENST00000448238 AVPR1BP47901 424 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 CDH12P55289 794 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 GRB2P62993 217 aaKnown RBP8.75□□□□□ -1.01
NIPBL-202ENST00000448238 AMHR2Q16671 573 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 NXPE4Q6UWF7 544 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 ZNF598Q86UK7 904 aaKnown RBP8.75□□□□□ -1.01
NIPBL-202ENST00000448238 CASTOR1Q8WTX7 329 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 MAL2Q969L2 176 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 MTMR9Q96QG7 549 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 TBL1XR1Q9BZK7 514 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.75□□□□□ -1.011e-12■■■■■ 52.9
NIPBL-202ENST00000448238 TPT1P8Q9HAU6 139 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 PTBP2Q9UKA9 531 aaKnown RBP8.75□□□□□ -1.01
NIPBL-202ENST00000448238 ZNF490Q9ULM2 529 aaPredicted RBP8.75□□□□□ -1.01
NIPBL-202ENST00000448238 TRAV19A0A0A6YYK7 116 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 GXYLT2A0PJZ3 443 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 LCMT2O60294 686 aaKnown RBP8.75□□□□□ -1.01
NIPBL-202ENST00000448238 FKTNO75072 461 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 LINC00032P0C843 101 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 MYBP10242 640 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 PTPN2P17706 415 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 ATP5C1P36542 298 aaKnown RBP8.75□□□□□ -1.01
NIPBL-202ENST00000448238 NPBWR1P48145 328 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 ACTBP60709 375 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 ACTG1P63261 375 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 TMEM62Q0P6H9 643 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 BAMBIQ13145 260 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 IL23RQ5VWK5 629 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 GLT8D1Q68CQ7 371 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 PET117Q6UWS5 81 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 MPZL3Q6UWV2 235 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 SMG8Q8ND04 991 aaKnown RBP8.75□□□□□ -1.01
NIPBL-202ENST00000448238 CEP41Q9BYV8 373 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 USP21Q9UK80 565 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 NPFFR2Q9Y5X5 522 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 FAM237BA0A1B0GVD1 139 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 TSPAN3O60637 253 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 HTR1AP08908 422 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 TFPTP0C1Z6 253 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 AQP1P29972 269 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 CDK18Q07002 472 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 TBX2Q13207 712 aaPredicted RBP8.75□□□□□ -1.01
NIPBL-202ENST00000448238 MPPED2Q15777 294 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 LYRM7Q5U5X0 104 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 SHC4Q6S5L8 630 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 B3GLCTQ6Y288 498 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 DPY19L3Q6ZPD9 716 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 PAPD5Q8NDF8 572 aaKnown RBP8.75□□□□□ -1.01
NIPBL-202ENST00000448238 PIWIL1Q96J94 861 aaKnown RBP8.75□□□□□ -1.01
NIPBL-202ENST00000448238 OPA3Q9H6K4 179 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 GAREM1Q9H706 876 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 RNF6Q9Y252 685 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 SNX10Q9Y5X0 201 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 RNF212BA8MTL3 300 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 SLC25A14O95258 325 aaPredicted RBP8.75□□□□□ -1.01
NIPBL-202ENST00000448238 FGF1P05230 155 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 COL6A2P12110 1019 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 BMP6P22004 513 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 FBLN1P23142 703 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 GRAPQ13588 217 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 UBAP2LQ14157 1087 aaKnown RBP8.75□□□□□ -1.01
NIPBL-202ENST00000448238 SLC10A1Q14973 349 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 ZACNQ401N2 412 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 NYAP1Q6ZVC0 841 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 NLRP8Q86W28 1048 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 CMTM1Q8IZ96 169 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 CLIP4Q8N3C7 705 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 SUMF2Q8NBJ7 301 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 CHST13Q8NET6 341 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 GRAPLQ8TC17 118 aaPredicted RBP8.75□□□□□ -1.01
NIPBL-202ENST00000448238 SERTAD4Q9NUC0 356 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 GLTPQ9NZD2 209 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 KCNIP1Q9NZI2 227 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 ZNF230Q9UIE0 474 aaPredicted RBP8.75□□□□□ -1.01
NIPBL-202ENST00000448238 KIAA0586Q9BVV6 1533 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 SLC22A2O15244 555 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 PRKAB2O43741 272 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 PAHP00439 452 aa8.75□□□□□ -1.01
NIPBL-202ENST00000448238 ZDHHC11BP0C7U3 371 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms